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Commit f0d1bbd2 authored by Jean-Eric Campagne's avatar Jean-Eric Campagne
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(JEC) 9/4/15 delete Sophya old stuff

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Sophya/Makefile deleted 100644 → 0
View file @ f0acd5a6
include $(SOPHYABASE)/include/sophyamake.inc
# ===== Libsharp =====
SHARPDIR = /Users/campagne/Travail/kits/libsharp-code/auto/
SHARPLIB = $(SHARPDIR)/lib
SHARPINC = $(SHARPDIR)/include
SHARPLIBN = -lsharp -lc_utils -lfftpack
# ===== NTL
NTLLIB = /opt/local/lib/libntl.a
CPPFLAGS += -I$(SHARPINC) -I/opt/local/include
LDFLAGS += -L$(SHARPLIB) $(SHARPLIBN) $(NTLLIB) -lm
OBJ = ./Objs/
EXE = ./Objs/
# Define our target list
.PHONY: default
default: tstlag
.PHONY: all
all : tstlag
.PHONY: tidy
tidy :
rm *~
.PHONY: clean
clean :
rm -f ./Objs/*
#C++ common Objects
CXXOBJ = $(OBJ)laguerreBuilder.o \
$(OBJ)laguerreTransform.o \
$(OBJ)lagSphericTransform.o
#C++ common Headers
CXXHDR = laguerreBuilder.h \
laguerreTransform.h \
lagSphericTransform.h \
extrafunctions.h
CXXFLAGS = -Wa,-q -march=native -fopenmp -fno-common -O3
CXXCOMPILE = $(CXX) $(CPPFLAGS) $(CXXFLAGS) -c
#LDFLAGS += $(OPENMP) -lm
#C++ rule for compiling
$(OBJ)%.o: %.cc $(CXXHDR)
echo "compile... $@ depend $^"
$(CXXCOMPILE) -c $< -o $@
######################
.PHONY: tstlag
tstlag: $(EXE)tstlag
echo '---- tstlag made'
$(EXE)tstlag : $(OBJ)tstlag.o $(CXXOBJ)
echo "Link..."
$(CXXLINK) -o $@ $(OBJ)tstlag.o $(CXXOBJ) $(LDFLAGS) $(SOPHYAEXTSLBLIST)
$(OBJ)tstlag.o: tstlag.cc $(CXXHDR)
echo "compile... $@"
$(CXXCOMPILE) $(FFLAGS) -c $< -o $@
Sophya/extrafunctions.h deleted 100644 → 0
View file @ f0acd5a6
#ifndef EXTRAFUNCTIONS_SEEN
#define EXTRAFUNCTIONS_SEEN
#ifdef SO_NTLXDBLE
#include "NTL/xdouble.h" /* double : mantisse, long: exponent (NTL-library) */
using namespace NTL;
#endif
namespace SOPHYA {
//Utility fonctions to unify the code writing between "long double" (r_16) and NTL/xdouble
#ifdef SO_NTLXDBLE
inline xdouble exp(const xdouble& x) {
return xexp(to_double(x));
}
#endif
inline long double exp(long double x) {
return expl(x);
}
inline long double fabs(long double x) {
return fabsl(x);
}
inline double to_double(long double x) {
return double(x);
}
}//End namespace
#endif
Sophya/lagSphericTransform.cc deleted 100644 → 0
View file @ f0acd5a6
#include <stdlib.h>
#include <iostream>
//Sophya
#include "sopnamsp.h"
#include "machdefs.h"
#include "pexceptions.h"
#define LAGSPHERICTRANSFORM_CC_BFILE // avoid extern template declarations
#include "lagSphericTransform.h"
#define DEBUG 0
namespace SOPHYA {
void BaseLagSphTransform::SetThetaPhiMap(string choice){
//Todo: on pourrait choisir ici son type de geoemetrie 2D: ici ECP = Fejer's 1 sum rule
//libsharp defini Lmax = L-1 avec une somme l:0...Lmax inclus
//dans sharp_testsuite.c Fejer's 1st rule
//nrings = 2Lmax+1
//npixperring = 2Mmax+1
//et pour les Alm
//set_trinagular_alm (Lmax,Mmax).
Nrings_ = 2*L_-1;
Nphi_ = 2*M_-1;
sharpjob_.set_ECP_geometry(Nrings_,Nphi_);
sharpjob_.set_triangular_alm_info(L_-1,M_-1);
Npix_ = get_npix(sharpjob_.get_geom_info());
Nalm_ = get_nalms(sharpjob_.get_alm_info());
geomDone_ = true;
cout << "SetThetaPhiMap: Nring, Nphi, Npix, Nalm "
<< Nrings_ << ", "
<< Nphi_ << ", "
<< Npix_ << ", "
<< Nalm_
<< endl;
}//SetThetaPhiMap
template <class T>
void LaguerreSphericalTransform<T>::Synthesis(const NDataBlock< complex<T> >& flmn,
NDataBlock<T>& fijk) {
int Ntot3DPix = Npix_*N_;
int NtotCoeff = Nalm_*N_;
if(flmn.Size() != NtotCoeff) throw SzMismatchError("SphLagTransform::Synthesis size error");
fijk.ReSize(Ntot3DPix);
//Perform the Inverse Laguerre Transform first
NDataBlock< complex<T> > xflmk(NtotCoeff); //T version of the flmk
#if DEBUG >= 1
cout << "SphLagTransform::Synthesis type <T> I/O .... Go..." << endl;
cout << "Start Inverse Laguerre...." << endl;
#endif
lagTrans_.MultiSynthesis(flmn, xflmk, Nalm_);
#if DEBUG >= 1
cout << "End Inverse Laguerre...." << endl;
cout << "Start Inverse H.Spherical Transform " << endl;
#endif
int off7n, off7k;
//perform the synthesis per shell
NDataBlock< complex<r_8> > flmk(Nalm_); // r_8 version of the flmk for libsharp
NDataBlock<T> nodes(lagTrans_.GetNodes());
for(int n =0; n<N_; n++){
off7n = n*Nalm_;
off7k = n*Npix_;
T scale = exp(-nodes(n)/2.); //<-------- use a scale to call sharp code
#if DEBUG >= 1
cout << "Synthesis... at shell num: " << n << " scale = " << scale << endl;
#endif
//#pragma omp parallel for schedule(dynamic,1)
for(int i=0;i<Nalm_;i++){
xflmk(off7n+i) *= scale;
flmk(i) = complex<r_8>(to_double(xflmk(off7n+i).real()),
to_double(xflmk(off7n+i).imag()));
#if DEBUG >= 2
cout << " Syntheis... flmk("<<i<<"): " << xflmk(off7n+i) << ", " << flmk(i) << endl;
#endif
}
NDataBlock<r_8> rfijk(Npix_); //version for libsharp : todo see if declaration outside the loops is better
sharpjob_.alm2map(&(flmk.Data()[0].real()),&rfijk.Data()[0],false); //the false is to forbidd accumulation
//#pragma omp parallel for schedule(dynamic,1)
for(int i=0;i<Npix_;i++){
fijk(off7k+i) = rfijk(i); //store & switch r_8 -> T
fijk(off7k+i) /= scale; //rescaling
#if DEBUG >= 2
cout << " Syntheis... rescaled fijk("<<i<<"): " << fijk(off7k+i) << " rfijk: "<< rfijk(i) << endl;
#endif
}
}//loop on shell
#if DEBUG >= 1
cout << "SphLagTransform::Synthesis.... Done" << endl;
#endif
}//Synthesis
template <class T>
void LaguerreSphericalTransform<T>::Analysis(const NDataBlock<T>& fijk,
NDataBlock< complex<T> >& flmn) {
int Ntot3DPix = Npix_*N_;
int NtotCoeff = Nalm_*N_;
if(fijk.Size() != Ntot3DPix) throw SzMismatchError("SphLagTransform::Analysis size error");
flmn.ReSize(NtotCoeff);
#if DEBUG >= 1
cout << "SphLagTransform::Analysis xdbl.... Go..." << endl;
#endif
//Perform the Spherical Hamonic analysis first
NDataBlock< complex<T> > xflmk(NtotCoeff);
NDataBlock<T> nodes(lagTrans_.GetNodes());
NDataBlock< complex<r_8> > flmk(Nalm_); //used by lisharp
NDataBlock<r_8> rfijk(Npix_); //used by libsharp
int off7n, off7k;
//Ylm analysis per shell
for(int n =0; n<N_; n++){
off7n = n*Nalm_;
off7k = n*Npix_;
#if DEBUG >= 1
cout << "Start Harmonic Spheric... at n = "<< n << endl;
#endif
//rescalling des pixels values
T scale = exp(nodes(n)/2.);
//#pragma omp parallel for schedule(dynamic,1)
for(int i=0;i<Npix_;i++){
rfijk(i) = to_double(fijk(off7k+i)*scale); //store & switch T -> r_8 with a scale
#if DEBUG >= 2
cout << "rfijk("<<i<<"): " << rfijk(i) << ", " << fijk(off7k+i) << endl;
#endif
}
sharpjob_.map2alm(&(rfijk.Data()[0]),&(flmk.Data()[0].real()),false); //the false is to forbidd accumulation
//#pragma omp parallel for schedule(dynamic,1)
for(int i=0; i<Nalm_; i++){
xflmk(i+off7n) = flmk(i);
xflmk(i+off7n) /= scale; // rescaling
#if DEBUG >= 2
cout << "flmk("<<i<<"): " << xflmk(i+off7n) << ", " << flmk(i+off7n) << endl;
#endif
}
}//loop on shell
#if DEBUG >= 1
cout << "End Harmonic Spheric..." << endl;
cout << "Start Laguerre..." << endl;
#endif
//Laguerre Transform
lagTrans_.MultiAnalysis(xflmk, flmn, Nalm_);
#if DEBUG >= 1
cout << "End Laguerre..." << endl;
#endif
#if DEBUG >= 2
for (int i=0;i<NtotCoeff; i++) {
cout << "flmn("<<i<<"): " <<flmn(i) << endl;
}
#endif
#if DEBUG >= 1
cout << "SphLagTransform::Analysis.... Done" << endl;
#endif
}//Analysis
///////////////////////////////////////////////////////////////
///////////////////////////////////////////////////////////////
#ifdef __CXX_PRAGMA_TEMPLATES__
#ifdef SO_LDBLE128
#pragma define_template LaguerreSphericalTransform<r_16>
#endif
#ifdef SO_NTLXDBLE
#pragma define_template LaguerreSphericalTransform<xdouble>
#endif
#endif
#if defined(ANSI_TEMPLATES) || defined(GNU_TEMPLATES)
#ifdef SO_LDBLE128
template class LaguerreSphericalTransform<r_16>;
#endif
#ifdef SO_NTLXDBLE
template class LaguerreSphericalTransform<xdouble>;
#endif
#endif
template <>
LaguerreSphericalTransform<r_8>::LaguerreSphericalTransform(int Lmax, int Mmax, int Nmax, r_8 R, int alpha):
BaseLagSphTransform(Lmax,Mmax,Nmax,alpha), R_(R), lagTrans_(Nmax,R,alpha) {
}//Ctor
template <>
LaguerreSphericalTransform<r_8>::~LaguerreSphericalTransform() {}
template <>
void LaguerreSphericalTransform<r_8>::Synthesis(const NDataBlock< complex<r_8> >& flmn,
NDataBlock<r_8>& fijk) {
int Ntot3DPix = Npix_*N_;
int NtotCoeff = Nalm_*N_;
if(flmn.Size() != NtotCoeff) throw SzMismatchError("SphLagTransform::Synthesis size error");
fijk.ReSize(Ntot3DPix);
//Perform the Inverse Laguerre Transform first
NDataBlock< complex<r_8> > flmk(NtotCoeff);
#if DEBUG >= 1
cout << "SphLagTransform::Synthesis type <r_8> I/O .... Go..." << endl;
cout << "Start Inverse Laguerre...." << endl;
#endif
lagTrans_.MultiSynthesis(flmn, flmk, Nalm_);
#if DEBUG >= 1
cout << "End Inverse Laguerre...." << endl;
cout << "Start Inverse H.Spherical Transform " << endl;
#endif
int off7n, off7k;
//perform the synthesis per shell
for(int n =0; n<N_; n++){
off7n = n*Nalm_;
off7k = n*Npix_;
#if DEBUG >= 2
cout << "Synthesis... at shell num: " << n << endl;
#endif
sharpjob_.alm2map(&(flmk.Data()[off7n].real()),&fijk.Data()[off7k],false);
}//loop on shell
#if DEBUG >= 1
cout << "SphLagTransform::Synthesis.... Done" << endl;
#endif
}//Synthesis
template <>
void LaguerreSphericalTransform<r_8>::Analysis(const NDataBlock<r_8>& fijk,
NDataBlock< complex<r_8> >& flmn) {
int Ntot3DPix = Npix_*N_;
int NtotCoeff = Nalm_*N_;
if(fijk.Size() != Ntot3DPix) throw SzMismatchError("SphLagTransform::Analysis size error");
flmn.ReSize(NtotCoeff);
#if DEBUG >= 1
cout << "SphLagTransform::Analysis xdbl.... Go..." << endl;
#endif
//Perform the Spherical Hamonic analysis first
NDataBlock< complex<r_8> > flmk(NtotCoeff);
int off7n, off7k;
//Ylm analysis per shell
for(int n =0; n<N_; n++){
off7n = n*Nalm_;
off7k = n*Npix_;
#if DEBUG >= 1
cout << "Start Harmonic Spheric... at n = "<< n << endl;
#endif
// sharpjob_.map2alm(&(fijk.Data()[0]),&(flmk.Data()[0].real()),false); //the false is to forbidd accumulation
sharpjob_.map2alm(&(fijk.Data()[off7k]),&(flmk.Data()[off7n].real()),false); //the false is to forbidd accumulation
}//loop on shell
#if DEBUG >= 1
cout << "End Harmonic Spheric..." << endl;
cout << "Start Laguerre..." << endl;
#endif
//Laguerre Transform
lagTrans_.MultiAnalysis(flmk, flmn, Nalm_);
#if DEBUG >= 1
cout << "End Laguerre..." << endl;
#endif
#if DEBUG >= 2
for (int i=0;i<NtotCoeff; i++) {
cout << "flmn("<<i<<"): " <<flmn(i) << endl;
}
#endif
#if DEBUG >= 1
cout << "SphLagTransform::Analysis.... Done" << endl;
#endif
}//Analysis
}// Fin de namespace
Sophya/lagSphericTransform.h deleted 100644 → 0
View file @ f0acd5a6
#ifndef LAGSPHERICTRANSFORM_SEEN
#define LAGSPHERICTRANSFORM_SEEN
//Sophya
#include "machdefs.h"
#include "ndatablock.h"
//Sharp
#include "sharp_lowlevel.h"
#include "sharp_geomhelpers.h"
#include "sharp_almhelpers.h"
#include "sharp_cxx.h"
// extern "C" {
// #include <complex.h>
// }
#include "laguerreTransform.h"
#include "extrafunctions.h"
namespace SOPHYA {
////////////////////////////////////////////////////////////////
//// --------- Class Spherical Harmonic Laguerre Transform -- //
////////////////////////////////////////////////////////////////
class BaseLagSphTransform {
public:
//! Creator
BaseLagSphTransform(int Lmax, int Mmax, int Nmax, int alpha=2):
L_(Lmax), M_(Mmax), N_(Nmax), alpha_(alpha),
Nrings_(0), Nphi_(0), Npix_(0), Nalm_(0),geomDone_(false) {
if (Mmax<0) M_=Lmax;
}
//! Destructor
virtual ~BaseLagSphTransform() {}
//! Number of colatitude rings of the 2D-sphere representation
int Nrings() { return Nrings_; }
//! Number of colatitude rings of the 2D-sphere representation
int NTheta() { return Nrings(); }
//! Number of phi values (pixels) per colatitude rings
int NPhi() { return Nphi_; }
//! Total number of 2D pixels
int Npix() { return Npix_; }
//! Total number of Alm coefficients
int Nalm() { return Nalm_; }
//! Choose the 2D map representation & initialization of libsharp
void SetThetaPhiMap(string choice ="");
protected:
//from sharp test suite
static ptrdiff_t get_npix(const sharp_geom_info *ginfo) {
ptrdiff_t res=0;
for (int i=0; i<ginfo->npairs; ++i){
res += ginfo->pair[i].r1.nph;
if (ginfo->pair[i].r2.nph>0) res += ginfo->pair[i].r2.nph;
}
return res;
}
//from sharp test suite
static ptrdiff_t get_nalms(const sharp_alm_info *ainfo) {
ptrdiff_t res=0;
for (int i=0; i<ainfo->nm; ++i)
res += ainfo->lmax-ainfo->mval[i]+1;
return res;
}
protected:
int L_; //!< Spherical harmonic limit such that l:0,...,L-1 m:0,...,l
int M_; //!< maximum value of m
int N_; //!< Radial band limit such that n:0,...,N-1
int alpha_; //!< parameter of the generalized Laguerre Polynomials
int Nrings_; //!< Number of colatitude rings of the 2D-sphere representation
int Nphi_; //!< Number of phi values (pixels) per colatitude rings
int Npix_; //!< Total number of 2D pixels
int Nalm_; //!< Total number of Alm coefficients
bool geomDone_; //!< Set to true once the geometry is properly set (See SetThetaPhiMap(string) )
sharp_cxxjob<r_8> sharpjob_; //!< libsharp job // voir si r_8 -> r_16 marcherait !!!
};
template<class T>
class LaguerreSphericalTransform : public BaseLagSphTransform {
public:
//! Constructor
LaguerreSphericalTransform(int Lmax, int Mmax, int Nmax, r_8 R, int alpha=2):
BaseLagSphTransform(Lmax,Mmax,Nmax,alpha), R_(R), lagTrans_(Nmax,(T)R,alpha) {
}//Ctor
//! Destructor
virtual ~LaguerreSphericalTransform() {}
//! Synthesis
/*! \brief Coeffs -> Pixels with Input/Output using T floating representation
\param flmn: 3D complex spherical-laguerre coefficients
\param fijk: 3D real function values
*/
void Synthesis(const NDataBlock< complex<T> >& flmn, NDataBlock<T>& fijk);
//! Analysis
/*! \brief Pixels -> Coeffs with Input/Output using T floating representation
\param fijk: 3D real function values
\param flmn: 3D complex spherical-laguerre coefficients
*/
void Analysis(const NDataBlock<T>& fijk, NDataBlock< complex<T> >& flmn);
protected:
r_8 R_; //!< Radial maximal value (not yet used)
LaguerreTransform<T> lagTrans_; //!< the Laguerre Transform
}; //class
//--------- extern template declarations (if needed) -----------
#if defined ( NEED_EXT_DECL_TEMP ) && !defined( LAGSPHERICTRANSFORM_CC_BFILE )
extern template class LaguerreSphericalTransform<r_8>;
#ifdef SO_LDBLE128
extern template class LaguerreSphericalTransform<r_16>;
#endif
#ifdef SO_NTLXDBLE
extern template class LaguerreSphericalTransform<xdouble>;
#endif
#endif // Fin de if defined ( NEED_EXT_DECL_TEMP )
} //fin du namesape
#endif // LAGSPHERICTRANSFORM
Sophya/laguerreBuilder.cc deleted 100644 → 0
View file @ f0acd5a6
#include <stdlib.h>
#include <iostream>
//Sophya
#include "sopnamsp.h"
#include "machdefs.h"
#include "pexceptions.h"
#define LAGUERREBUILDER_CC_BFILE // avoid extern template declarations
#include "laguerreBuilder.h"
#define DEBUG 1
namespace SOPHYA {
template <class T>
void LaguerrePolyQuad<T>::QuadWeightNodes(NDataBlock<T>& nodes, NDataBlock<T>& weights){
nodes.ReSize(N_);
weights.ReSize(N_);
T x;
T tN = (T)N_;
//tmp1 = Gamma(n+alpha+1)/(n! (n+1)^2) dans le cas ou alpha est un entier >0
// = (n+alpha)!/(n! (n+1)^2) c'est le coeff du weight
T tmp1 = tN + (T)alpha_;
int alphaM1 = alpha_-1;
for (int i=1;i<alphaM1;i++) tmp1 *= (tmp1-(T)1.);
tmp1 /= (tN+1.);
//Approximation by Sould & Secrest
for(int k=0;k<N_;k++){
if (k == 0) {
x = (T)((1.0+alpha_)*(3.+0.92*alpha_)/(1.+2.4*N_+1.8*alpha_));
} else if (k == 1) {
x += (T)((15.+6.25*alpha_)/(1.+0.9*alpha_+2.5*N_));
} else {//k>=2
int km1 = k-1;
T c0 = (T)((1.+2.55*km1)/(1.9*km1)+1.26*km1*alpha_/(1.+3.5*km1));
T c1 = (T)(1.+0.3*alpha_);
x += c0*(x-nodes(k-2))/c1;
}
T xapp = x;
//Refinement
RootUpdate(x);