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HOURDIN Christophe
pulsation-tools
Commits
762c48a5
Commit
762c48a5
authored
Oct 08, 2021
by
HOURDIN Christophe
Browse files
Processor distribution for XIOS and croco
parent
1559dfbb
Changes
9
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9 changed files
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38 additions
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57 deletions
+38
-57
compile/xios/xios_launch.file_IRENE-AMD.base
compile/xios/xios_launch.file_IRENE-AMD.base
+0
-10
compile/xios/xios_launch.file_IRENE.base
compile/xios/xios_launch.file_IRENE.base
+0
-10
compile/xios/xios_launch.file_JEANZAY.base
compile/xios/xios_launch.file_JEANZAY.base
+0
-10
scripts/JEANZAY.cpu_info.sh
scripts/JEANZAY.cpu_info.sh
+3
-0
scripts/JEANZAY.header
scripts/JEANZAY.header
+2
-2
scripts/compile_oce.sh
scripts/compile_oce.sh
+2
-8
scripts/job.base.sh
scripts/job.base.sh
+0
-1
scripts/make_xios_launch.file.sh
scripts/make_xios_launch.file.sh
+24
-11
scripts/namelist_exp.sh
scripts/namelist_exp.sh
+7
-5
No files found.
compile/xios/xios_launch.file_IRENE-AMD.base
deleted
100644 → 0
View file @
1559dfbb
# --- xios_launch.file ---
#
# For running ROMS with XIOS I/O server, use the command:
#
# mpirun --app xios_launch.file
#
# search MPMD (Multi Program Multi Data) for documentation
# (with irene.info for example)
<nproc_model_oce> ./<model_oce>
<nproc_xios> ./<xios_server>
compile/xios/xios_launch.file_IRENE.base
deleted
100644 → 0
View file @
1559dfbb
# --- xios_launch.file ---
#
# For running ROMS with XIOS I/O server, use the command:
#
# mpirun --app xios_launch.file
#
# search MPMD (Multi Program Multi Data) for documentation
# (with irene.info for example)
<nproc_model_oce> ./<model_oce>
<nproc_xios> ./<xios_server>
compile/xios/xios_launch.file_JEANZAY.base
deleted
100644 → 0
View file @
1559dfbb
# --- xios_launch.file ---
#
# For running ROMS with XIOS I/O server, use the command:
#
# mpirun --app xios_launch.file
#
# search MPMD (Multi Program Multi Data) for documentation
# (with irene.info for example)
0-<nproc_model_oce-1> ./<model_oce>
<nproc_model_oce>-<add_nproc_xios> ./<xios_server>
scripts/JEANZAY.cpu_info.sh
View file @
762c48a5
#!/bin/bash
# 2 processeurs Intel Cascade Lake 6248 (20 cœurs à 2,5 GHz), soit 40 cœurs par nœud,
# 192 Go de mémoire par nœud,
#===============================================================================
# Commandes suivi de job (Partie commune IRENE & IRENE-AMD)
#===============================================================================
...
...
scripts/JEANZAY.header
View file @
762c48a5
...
...
@@ -14,8 +14,8 @@
#-------------------------------------------------------------------------------
# cpu : Intel Cascade Lake 6248
# Cores/Node :
4
0
# RAM/Node : 160 GB (4GB/core)
# Cores/Node :
2 x 2
0
# RAM/Node : 160 GB (4GB/core)
... ou 192 Go de mémoire par noeud
#-------------------------------------------------------------------------------
# tout travail demandant plus d'un nœud tourne en mode exclusif
...
...
scripts/compile_oce.sh
View file @
762c48a5
...
...
@@ -42,7 +42,7 @@ sed -e "s|<croco_source>|${CROCO_SOURCE}|" \
if
${
USE_XIOS
}
;
then
sed
-e
"s|<xios_dir>|
${
XIOS_DIR
}
|"
jobcomp.tmp
>
jobcomp
#
rm -f jobcomp.tmp
rm
-f
jobcomp.tmp
else
mv
jobcomp.tmp jobcomp
fi
...
...
@@ -92,13 +92,7 @@ if ( ! [ -d ${CROCO_LAST} ] ) || ( [ -d ${CROCO_LAST} ] && [ "${test_diff}" != "
exec
&>
>(
tee
${
COMPDIR
}
/croco/croco_compile_listing.txt
)
if
!
[
-d
${
CROCO_LAST
}
]
;
then
echo
"----------------------------------------------------------------------"
echo
" First compilation... "
echo
"----------------------------------------------------------------------"
echo
""
mkdir
-p
${
CROCO_SCRATCH
}
elif
[
-d
${
CROCO_LAST
}
]
&&
[
"
${
test_diff
}
"
!=
""
]
;
then
if
[
-d
${
CROCO_LAST
}
]
&&
[
"
${
test_diff
}
"
!=
""
]
;
then
# CROCO_LAST_OLD="${EXPDIR}/compile/${CROCO_LAST}_${OLD}"
printf
"
\n\n\n\n
######################################################################
\n
"
echo
"----------------------------------------------------------------------"
...
...
scripts/job.base.sh
View file @
762c48a5
...
...
@@ -91,7 +91,6 @@ if [ ${LOADL_STEP_NAME} == "get_file" ] || [ ${LOADL_STEP_NAME} == "XXX" ]; then
if
${
USE_OCE
}
;
then
echo
"get oceanic model:"
cpfile
${
JOBDIR
}
/
${
ASCII_DIR_IMG_ROOT
}
/compile/
${
MODEL_OCE
}
/
${
MODEL_OCE
}
_
${
COMPUTER
}
.exe
.
${
USE_XIOS
}
&&
cpfile
${
JOBDIR
}
/
${
ASCII_DIR_IMG_ROOT
}
/compile/xios/xios_launch.file_
${
COMPUTER
}
.base
.
${
USE_XIOS
}
&&
cpfile
${
JOBDIR
}
/
${
ASCII_DIR_IMG_ROOT
}
/compile/xios/
${
XIOS_VERSION
}
/bin/xios_server.exe
.
echo
""
...
...
scripts/make_xios_launch.file.sh
View file @
762c48a5
...
...
@@ -13,22 +13,35 @@ set -ue
echo
""
echo
"make xios_launch.file..."
rm
-f
xios_launch.file
;
touch
xios_launch.file
if
[
${
COMPUTER
}
==
"JEANZAY"
]
;
then
sed
-e
"s/<model_oce>/
${
MODEL_OCE
}
_
${
COMPUTER
}
.exe/"
\
-e
"s/<xios_server>/xios_server.exe/"
\
-e
"s/<nproc_model_oce-1>/
$((
${
NPROC_X
}
*
${
NPROC_Y
}
*
${
CPU_PER_TASK
}
-
1
))
/"
\
-e
"s/<nproc_model_oce>/
$((
${
NPROC_X
}
*
${
NPROC_Y
}
*
${
CPU_PER_TASK
}
))
/"
\
-e
"s/<add_nproc_xios>/
$((
${
NPROC_X
}
*
${
NPROC_Y
}
*
${
CPU_PER_TASK
}
+
${
NXIOS
}
-
1
))
/"
\
xios_launch.file_
${
COMPUTER
}
.base
>
xios_launch.file
echo
"0-1 ./xios_server.exe"
>>
xios_launch.file
echo
"1-
${
NCORES_PER_NODE
}
./croco_
${
COMPUTER
}
.exe"
>>
xios_launch.file
N1
=
${
NCORES_PER_NODE
}
for
ii
in
$(
seq
1
$((
${
NXIOS
}
-
1
))
)
do
echo
"
${
N1
}
-
$((
${
N1
}
+
1
))
./croco_
${
COMPUTER
}
.exe"
>>
xios_launch.file
echo
"
$((
${
N1
}
+
1
))
-
$((
${
N1
}
+
${
NCORES_PER_NODE
}
))
./xios_server.exe"
>>
xios_launch.file
N1
=
$((
${
N1
}
+
${
NCORES_PER_NODE
}
))
done
echo
"
${
N1
}
-
$((
${
N1
}
+
${
NXIOS
}
))
./croco_
${
COMPUTER
}
.exe"
>>
xios_launch.file
else
# for IRENE & IRENE-AMD
# Sans placement.
# echo "${NXIOS} ./xios_server.exe" >> xios_launch.file
# echo "$(( ${NPROC_X} * ${NPROC_Y} )) ./croco_${COMPUTER}.exe" >> xios_launch.file
for
ii
in
$(
seq
1
${
NXIOS
}
)
do
echo
"1 ./xios_server.exe"
>>
xios_launch.file
echo
"
${
NCORES_PER_NODE
}
./croco_
${
COMPUTER
}
.exe"
>>
xios_launch.file
done
export
NBTOTAL
=
$((
${
NPROC_X
}
*
${
NPROC_Y
}
+
${
NXIOS
}
))
export
NB
=
$((
${
NXIOS
}
*
${
NCORES_PER_NODE
}
))
echo
"
$((
${
NBTOTAL
}
-
${
NB
}
))
./croco_
${
COMPUTER
}
.exe"
>>
xios_launch.file
sed
-e
"s/<model_oce>/
${
MODEL_OCE
}
_
${
COMPUTER
}
.exe/"
\
-e
"s/<xios_server>/xios_server.exe/"
\
-e
"s/<nproc_model_oce>/
$((
${
NPROC_X
}
*
${
NPROC_Y
}))
/"
\
-e
"s/<nproc_xios>/
${
NXIOS
}
/"
\
xios_launch.file_
${
COMPUTER
}
.base
>
xios_launch.file
fi
chmod
755 xios_launch.file
...
...
scripts/namelist_exp.sh
View file @
762c48a5
...
...
@@ -39,7 +39,9 @@ export MODE_TEST=true # for running different tests in the same exp with diff
# export TEST_NAME="_remake_ASAP2020_KPP_Steph_Y1985M1_004_JEANZAY_12x10x2_2tsp_optim_MY_SRC_v2.00"
# export TEST_NAME="_croco+agrif+pisces_01_rst_nc4par_print_xios_2ts_12x10x1+24_debug_JEANZAY"
# export TEST_NAME="_croco+agrif+pisces_02_rst_nc4par_print_xios_2ts_20x18x1+24_optim_IRENE-AMD"
export
TEST_NAME
=
"_croco+agrif+pisces_03_rst_nc4par_print_xios_2ts_20x18x1+24_optim_
${
COMPUTER
}
"
# export TEST_NAME="_croco+agrif+pisces_03_rst_nc4par_print_xios_2ts_20x18x1+24_optim_${COMPUTER}"
# export TEST_NAME="_croco+agrif+pisces_rst_nc4par_print_xios_2ts_20x18x1+24_optim_${COMPUTER}"
export
TEST_NAME
=
"_test_03_32_xios_1_pour_12_croco_s_
${
COMPUTER
}
"
export
TEST_SCRIPT
=
false
# the job is not submited
...
...
@@ -69,11 +71,11 @@ export USE_BIOLOGY=true
### MPI
export
USE_MPI
=
true
if
[
${
COMPUTER
}
==
"JEANZAY"
]
;
then
export
NPROC_X
=
12
;
export
NPROC_Y
=
10
;
export
CPU_PER_TASK
=
1
export
NPROC_X
=
12
;
export
NPROC_Y
=
10
;
export
CPU_PER_TASK
=
1
;
export
NCORES_PER_NODE
=
20
;
# biproc 2x20
elif
[
${
COMPUTER
}
==
"IRENE"
]
;
then
export
NPROC_X
=
20
;
export
NPROC_Y
=
18
;
export
CPU_PER_TASK
=
1
export
NPROC_X
=
20
;
export
NPROC_Y
=
18
;
export
CPU_PER_TASK
=
1
;
export
NCORES_PER_NODE
=
24
;
# biproc 2x24
elif
[
${
COMPUTER
}
==
"IRENE-AMD"
]
;
then
export
NPROC_X
=
20
;
export
NPROC_Y
=
18
;
export
CPU_PER_TASK
=
1
export
NPROC_X
=
20
;
export
NPROC_Y
=
18
;
export
CPU_PER_TASK
=
1
;
export
NCORES_PER_NODE
=
32
;
# biproc 2x64
fi
### OpenMP
...
...
@@ -97,7 +99,7 @@ fi
# Modify the xml files in the param_inputs directory to select the fields and the frequency of the outputs
export
USE_XIOS
=
true
export
XIOS_VERSION
=
"XIOS_X64_
${
COMPUTER
}
_trunk_r2219-2021_09_06"
export
NXIOS
=
24
#4
export
NXIOS
=
$((
${
NPROC_X
}
*
${
NPROC_Y
}
/
(
${
NCORES_PER_NODE
}
-
1
)
))
export
NXIOSper
=
-1
# just for nemo? attache/detache?
# if USE_XIOS=false
...
...
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