From cd392c264e1b724577d01d2e2349b4fce7aff63e Mon Sep 17 00:00:00 2001
From: Lionel GUEZ <guez@lmd.ens.fr>
Date: Wed, 21 Feb 2024 18:00:13 +0100
Subject: [PATCH] Do not create a Graphviz file
Just write a new edgelist. The Graphviz file can be created afterwards
with `edgelist_to_Graphviz.py`.
---
Overlap/Analysis/extract_component_nx.py | 6 +-----
1 file changed, 1 insertion(+), 5 deletions(-)
diff --git a/Overlap/Analysis/extract_component_nx.py b/Overlap/Analysis/extract_component_nx.py
index e7f49d0b..cb3cc0fd 100755
--- a/Overlap/Analysis/extract_component_nx.py
+++ b/Overlap/Analysis/extract_component_nx.py
@@ -10,7 +10,6 @@ given as argument of the script.
"""
import networkx as nx
-from networkx import nx_agraph
import report_graph
@@ -54,7 +53,4 @@ if __name__ == "__main__":
len_H = len(H)
print("Number of nodes:", len_H)
print("Number of edges:", H.number_of_edges())
- A = nx_agraph.to_agraph(H)
- report_graph.partition_graph_date(A, H.graph["e_overestim"])
- A.write("eddy_graph.gv")
- print('Created file "eddy_graph.gv".')
+ nx.write_edgelist(H, "component.csv", data = False)
--
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