diff --git a/Overlap/Analysis/report_graph.py b/Overlap/Analysis/report_graph.py index db475b07829016fac455133a092de3eadddafcc2..b4a48c951c55eb3ae8293b4fc4521a56a0cdf5e1 100755 --- a/Overlap/Analysis/report_graph.py +++ b/Overlap/Analysis/report_graph.py @@ -12,7 +12,6 @@ from os import path import os import networkx as nx -from networkx import nx_agraph import util_eddies @@ -106,9 +105,6 @@ if __name__ == "__main__": # Parse arguments: parser = argparse.ArgumentParser() parser.add_argument("edgelist_file") - parser.add_argument( - "--gv", help="Create Graphviz file", action="store_true" - ) parser.add_argument( "-m", "--merging", @@ -169,9 +165,3 @@ if __name__ == "__main__": print("Number of leaves:", n1) print("Number of roots:", n2) - - if args.gv: - A = nx_agraph.to_agraph(G) - partition_graph_date(A, G.graph["e_overestim"]) - A.write("eddy_graph.gv") - print('Created file "eddy_graph.gv".') diff --git a/Overlap/Analysis/tests.json b/Overlap/Analysis/tests.json index 5dfd64283580c88db11a81f88c11069ea6965e5d..fbb2bb8002e511d4aeb185bbb13946084c185363 100644 --- a/Overlap/Analysis/tests.json +++ b/Overlap/Analysis/tests.json @@ -2,7 +2,6 @@ "Report_graph_cyclo": { "command": [ "$src_dir/Overlap/Analysis/report_graph.py", - "--gv", "--merging", "$tests_old_dir/EGr2nd15md4np3_cyclo/edgelist.csv" ] @@ -10,7 +9,6 @@ "Report_graph_anti": { "command": [ "$src_dir/Overlap/Analysis/report_graph.py", - "--gv", "--merging", "$tests_old_dir/EGr2nd15md4np3/edgelist.csv" ] @@ -27,7 +25,6 @@ "Report_graph_int": { "command": [ "$src_dir/Overlap/Analysis/report_graph.py", - "--gv", "--merging", "$tests_old_dir/Graph_from_Matlab_v6_anti/edgelist.csv" ]