{
   "Get_1_outerm": {
      "input": "&main_nml date = 20454/\n",
      "create_file": [
         "config_nml.txt",
         "&config_nml /\n"
      ],
      "symlink": [
         [
            "$src_dir/Inst_eddies/Tests/Input/Region_1/outside_points_get_1_outerm.csv",
            "outside_points.csv"
         ]
      ],
      "commands": [
         [
            "mkdir",
            "-p",
            "SHPC/Slice_0/Cyclones"
         ],
         [
            "$build_dir/Inst_eddies/Tests/test_get_1_outerm",
            "$src_dir/Inst_eddies/Tests/Input/Region_1/huv_region_1_2006_01_01.nc",
            "$src_dir/Inst_eddies/Tests/Input/Region_1/huv_region_1_2006_01_01.nc"
         ]
      ]
   },
   "Get_1_outerm_noise_2_8": {
      "description": "Assume insufficient amplitude for extrema 2 and 8. Even if extremum 8 does not have a particularly small amplitude, we just want to see the target extremum, 6, grow its outermost contour compared to the case without minimum amplitude.",
      "input": "&main_nml date = 20454/\n",
      "create_file": [
         "config_nml.txt",
         "&config_nml /\n"
      ],
      "symlink": [
         "$src_dir/Inst_eddies/Tests/Input/Region_1/outside_points.csv"
      ],
      "commands": [
         [
            "mkdir",
            "-p",
            "SHPC/Slice_0/Cyclones"
         ],
         [
            "$build_dir/Inst_eddies/Tests/test_get_1_outerm",
            "$src_dir/Inst_eddies/Tests/Input/Region_1/huv_region_1_2006_01_01.nc",
            "$src_dir/Inst_eddies/Tests/Input/Region_1/huv_region_1_2006_01_01.nc"
         ]
      ]
   },
   "Get_1_outerm_noise_2": {
      "description": "Negative value for extremum 2.",
      "input": "&main_nml date = 20454/\n",
      "create_file": [
         "config_nml.txt",
         "&config_nml /\n"
      ],
      "symlink": [
         [
            "$src_dir/Inst_eddies/Tests/Input/Region_1/outside_points_get_1_outerm_noise_2.csv",
            "outside_points.csv"
         ]
      ],
      "commands": [
         [
            "mkdir",
            "-p",
            "SHPC/Slice_0/Cyclones"
         ],
         [
            "$build_dir/Inst_eddies/Tests/test_get_1_outerm",
            "$src_dir/Inst_eddies/Tests/Input/Region_1/huv_region_1_2006_01_01.nc",
            "$src_dir/Inst_eddies/Tests/Input/Region_1/huv_region_1_2006_01_01.nc"
         ]
      ]
   },
   "Good_contour": {
      "description": "3 contours at that level. 2 contain the inside point, one of which contains the 2 outside points.",
      "symlink": [
         [
            "$src_dir/Inst_eddies/Tests/Input/outside_points_1.csv",
            "outside_points.csv"
         ]
      ],
      "command": [
         "$build_dir/Inst_eddies/Tests/test_good_contour",
         "$src_dir/Inst_eddies/Tests/Input/example.nc"
      ],
      "stdin_filename": "$src_dir/Inst_eddies/Tests/Input/good_contour.txt"
   },
   "Good_contour_2": {
      "description": "Select another good contour. Case where one of the contours tested does not contain inside point.",
      "symlink": [
         [
            "$src_dir/Inst_eddies/Tests/Input/outside_points_2.csv",
            "outside_points.csv"
         ]
      ],
      "command": [
         "$build_dir/Inst_eddies/Tests/test_good_contour",
         "$src_dir/Inst_eddies/Tests/Input/example.nc"
      ],
      "stdin_filename": "$src_dir/Inst_eddies/Tests/Input/good_contour_2.txt"
   },
   "No_good_contour": {
      "symlink": [
         [
            "$src_dir/Inst_eddies/Tests/Input/outside_points_1.csv",
            "outside_points.csv"
         ]
      ],
      "command": [
         "$build_dir/Inst_eddies/Tests/test_good_contour",
         "$src_dir/Inst_eddies/Tests/Input/example.nc"
      ],
      "stdin_filename": "$src_dir/Inst_eddies/Tests/Input/no_good_contour.txt"
   },
   "Inside_4_true": {
      "stdin_filename": "$src_dir/Inst_eddies/Tests/Input/inside_4_true_nml.txt",
      "command": [
         "$build_dir/Inst_eddies/Tests/test_inside_4",
         "$src_dir/Inst_eddies/Tests/Input/outermost_eddy_5"
      ]
   },
   "Inside_4_false": {
      "stdin_filename": "$src_dir/Inst_eddies/Tests/Input/inside_4_false_nml.txt",
      "command": [
         "$build_dir/Inst_eddies/Tests/test_inside_4",
         "$src_dir/Inst_eddies/Tests/Input/outermost_eddy_5"
      ]
   },
   "Local_extrema": {
      "input": "f",
      "command": [
         "$build_dir/Inst_eddies/Tests/test_local_extrema",
         "$src_dir/Inst_eddies/Tests/Input/Region_1/huv_region_1_2006_01_01.nc"
      ]
   },
   "Local_extrema_larger": {
      "description": "With a larger region than in test Local_extrema.",
      "input": "f",
      "command": [
         "$build_dir/Inst_eddies/Tests/test_local_extrema",
         "$src_dir/Inst_eddies/Tests/Input/h_region_2.nc"
      ]
   },
   "Local_extrema_missing": {
      "input": "f\n",
      "description": "With input file containing missing values.",
      "command": [
         "$build_dir/Inst_eddies/Tests/test_local_extrema",
         "$src_dir/Inst_eddies/Tests/Input/h_region_4.nc"
      ]
   },
   "Local_extrema_periodic": {
      "description": "Same as Local_extrema but with periodicity. The data is actually regional so there is a discontinuity in the field and the longitude grid assuming periodicity is not regular.",
      "input": "t\n",
      "command": [
         "$build_dir/Inst_eddies/Tests/test_local_extrema",
         "$src_dir/Inst_eddies/Tests/Input/Region_1/huv_region_1_2006_01_01.nc"
      ]
   },
   "Local_extrema_periodic_2": {
      "description": "The data is really global so there is no discontinuity in the field and the longitude grid assuming periodicity is regular.",
      "input": "t\n",
      "command": [
         "$build_dir/Inst_eddies/Tests/test_local_extrema",
         "$src_dir/Inst_eddies/Tests/Input/h_2006_01_01_coarse.nc"
      ]
   },
   "Max_speed_contour_ssh": {
      "input": "&main_nml /\n",
      "command": [
         "$build_dir/Inst_eddies/Tests/test_max_speed_contour_ssh",
         "$src_dir/Inst_eddies/Tests/Input/Region_1/huv_region_1_2006_01_01.nc",
         "$src_dir/Inst_eddies/Tests/Input/Region_1/huv_region_1_2006_01_01.nc"
      ]
   },
   "Max_speed_contour_ssh_north": {
      "description": "direction = 2",
      "input": "&main_nml IND_EXTR= 4,14/\n",
      "command": [
         "$build_dir/Inst_eddies/Tests/test_max_speed_contour_ssh",
         "$src_dir/Inst_eddies/Tests/Input/Region_1/huv_region_1_2006_01_01.nc",
         "$src_dir/Inst_eddies/Tests/Input/Region_1/huv_region_1_2006_01_01.nc"
      ]
   },
   "Max_speed_contour_ssh_missing": {
      "description": "Missing value in speed.",
      "input": "&main_nml IND_EXTR= 3, 4/\n",
      "command": [
         "$build_dir/Inst_eddies/Tests/test_max_speed_contour_ssh",
         "$src_dir/Inst_eddies/Tests/Input/huv_2015_11_29.nc",
         "$src_dir/Inst_eddies/Tests/Input/huv_2015_11_29.nc"
      ]
   },
   "Mean_speed": {
      "input": "&main_nml /\n",
      "symlink": [
         [
            "$src_dir/Inst_eddies/Tests/Input/Region_1/huv_region_1_2006_01_01.nc",
            "uv.nc"
         ]
      ],
      "command": [
         "$build_dir/Inst_eddies/Tests/test_mean_speed",
         "$PWD/Get_1_outerm/SHPC/Slice_0/Cyclones/outermost_contour"
      ]
   },
   "Mean_speed_alt": {
      "input": "&main_nml /\n",
      "symlink": [
         [
            "$src_dir/Inst_eddies/Tests/Input/Region_1/huv_region_1_2006_01_01.nc",
            "uv.nc"
         ]
      ],
      "command": [
         "$build_dir/Inst_eddies/Tests/test_mean_speed",
         "$src_dir/Inst_eddies/Tests/Input/outermost_contour_alt"
      ]
   },
   "Set_max_speed": {
      "create_file": [
         "config_nml.txt",
         "&config_nml /\n"
      ],
      "symlink": [
         [
            "$src_dir/Inst_eddies/Tests/Input/empty_outside_points.csv",
            "outside_points.csv"
         ]
      ],
      "commands": [
         [
            "mkdir",
            "-p",
            "SHPC/Slice_0/Cyclones"
         ],
         [
            "$build_dir/Inst_eddies/Tests/test_set_max_speed",
            "$src_dir/Inst_eddies/Tests/Input/h_outermost.nc",
            "$src_dir/Inst_eddies/Tests/Input/uv_outermost.nc",
            "$PWD/Get_1_outerm/SHPC"
         ]
      ],
      "input": "t\n"
   },
   "Set_max_speed_noise": {
      "create_file": [
         "config_nml.txt",
         "&config_nml /\n"
      ],
      "symlink": [
         "$src_dir/Inst_eddies/Tests/Input/Region_1/outside_points.csv"
      ],
      "commands": [
         [
            "mkdir",
            "-p",
            "SHPC/Slice_0/Cyclones"
         ],
         [
            "$build_dir/Inst_eddies/Tests/test_set_max_speed",
            "$src_dir/Inst_eddies/Tests/Input/Region_1/huv_region_1_2006_01_01.nc",
            "$src_dir/Inst_eddies/Tests/Input/Region_1/huv_region_1_2006_01_01.nc",
            "$PWD/Get_1_outerm_noise_2_8/SHPC"
         ]
      ],
      "input": "t\n"
   },
   "Set_max_speed_degenerate": {
      "create_file": [
         "config_nml.txt",
         "&config_nml /\n"
      ],
      "symlink": [
         [
            "$src_dir/Inst_eddies/Tests/Input/empty_outside_points.csv",
            "outside_points.csv"
         ]
      ],
      "description": "The SSH value of the extremum is exactly equal to the SSH value of the point next to the extremum, eastward. This points is selected as the point with maximum azimuthal speed. Then good_contour returns a null polyline.",
      "commands": [
         [
            "mkdir",
            "-p",
            "SHPC/Slice_0/Anticyclones"
         ],
         [
            "$build_dir/Inst_eddies/Tests/test_set_max_speed",
            "$src_dir/Inst_eddies/Tests/Input/degenerated_SSH.nc",
            "$src_dir/Inst_eddies/Tests/Input/degenerated_SSH.nc",
            "$src_dir/Inst_eddies/Tests/Input/SHPC_degenerate"
         ]
      ],
      "input": "f\n"
   },
   "Extraction_eddies_region_1": {
      "create_file": [
         "config_nml.txt",
         "&config_nml min_amp = 0./\n"
      ],
      "input": "&dates_nml date = 20454/\n",
      "commands": [
         [
            "mkdir",
            "-p",
            "SHPC/Slice_0/Cyclones",
            "SHPC/Slice_0/Anticyclones"
         ],
         [
            "$build_dir/Inst_eddies/inst_eddies",
            "$src_dir/Inst_eddies/Tests/Input/Region_1/huv_region_1_2006_01_01.nc",
            "$src_dir/Inst_eddies/Tests/Input/Region_1/huv_region_1_2006_01_01.nc"
         ]
      ]
   },
   "Extraction_eddies_region_1_noise": {
      "description": "Same as Extraction_eddies_region_1 but with non-zero minimal amplitude.",
      "create_file": [
         "config_nml.txt",
         "&config_nml /\n"
      ],
      "input": "&dates_nml date = 20454/\n",
      "commands": [
         [
            "mkdir",
            "-p",
            "SHPC/Slice_0/Cyclones",
            "SHPC/Slice_0/Anticyclones"
         ],
         [
            "$build_dir/Inst_eddies/inst_eddies",
            "$src_dir/Inst_eddies/Tests/Input/Region_1/huv_region_1_2006_01_01.nc",
            "$src_dir/Inst_eddies/Tests/Input/Region_1/huv_region_1_2006_01_01.nc"
         ]
      ]
   },
   "Extraction_eddies_region_2": {
      "create_file": [
         "config_nml.txt",
         "&config_nml min_amp = 0./\n"
      ],
      "input": "&dates_nml date = 20454/\n",
      "commands": [
         [
            "mkdir",
            "-p",
            "SHPC/Slice_0/Cyclones",
            "SHPC/Slice_0/Anticyclones"
         ],
         [
            "$build_dir/Inst_eddies/inst_eddies",
            "$src_dir/Inst_eddies/Tests/Input/h_region_2.nc",
            "$src_dir/Inst_eddies/Tests/Input/uv_region_2.nc"
         ]
      ]
   },
   "Extraction_eddies_region_4": {
      "description": "Part of the domain has missing values.",
      "create_file": [
         "config_nml.txt",
         "&config_nml /\n"
      ],
      "command": [
         "$build_dir/Inst_eddies/inst_eddies.py",
         "-b",
         "16.125",
         "20.875",
         "-38.875",
         "-34.125",
         "$Aviso_DT_dir/dt_global_allsat_phy_l4_20060101_20210726.nc",
         "$Aviso_DT_dir/dt_global_allsat_phy_l4_20060102_20210726.nc"
      ],
      "input": "20454\n0\n"
   },
   "Inst_eddies_py": {
      "description": "Like Extraction_eddies_region_4, but for a single date. This is a test of options of the wrapper script rather than a test of the Fortran executable.",
      "create_file": [
         "config_nml.txt",
         "&config_nml /\n"
      ],
      "command": [
         "$build_dir/Inst_eddies/inst_eddies.py",
         "-b",
         "16.125",
         "20.875",
         "-38.875",
         "-34.125",
         "$Aviso_DT_dir/dt_global_allsat_phy_l4_20060101_20210726.nc"
      ],
      "input": "20454\n0\n"
   },
   "Inst_eddies_loop": {
      "create_file": [
         "config_nml.txt",
         "&config_nml /\n"
      ],
      "command": [
         "$build_dir/Inst_eddies/inst_eddies_Aviso.py",
         "--template=huv_region_1_%Y_%m_%d.nc",
         "-l",
         "2006-01-04",
         "$src_dir/Inst_eddies/Tests/Input/Region_1/huv_region_1_2006_01_01.nc",
         "0"
      ],
      "input": "20454\n"
   },
   "Nearby_extr": {
      "command": [
         "$build_dir/Inst_eddies/Tests/test_nearby_extr",
         "$PWD/Inst_eddies_loop/SHPC"
      ],
      "input": "&main_nml /\n",
      "description": "We are using Inst_eddies_loop, which is a previous test."
   },
   "Set_all_outerm_periodic": {
      "description": "test_set_all_outerm with periodicity.",
      "create_file": [
         "config_nml.txt",
         "&config_nml MAX_RADIUS_deg = 80., 72., min_radius = 20./\n"
      ],
      "commands": [
         [
            "mkdir",
            "-p",
            "SHPC/Slice_0/Cyclones",
            "SHPC/Slice_0/Anticyclones"
         ],
         [
            "$build_dir/Inst_eddies/Tests/test_set_all_outerm",
            "$src_dir/Inst_eddies/Tests/Input/h_2006_01_01_coarse.nc",
            "$src_dir/Inst_eddies/Tests/Input/uv_2006_01_01_coarse.nc"
         ]
      ]
   },
   "Extraction_eddies_periodic": {
      "description": "Periodic domain.",
      "create_file": [
         "config_nml.txt",
         "&config_nml min_amp = 0., MAX_RADIUS_deg = 80., 72./\n"
      ],
      "input": "&dates_nml date = 20454/\n",
      "commands": [
         [
            "mkdir",
            "-p",
            "SHPC/Slice_0/Cyclones",
            "SHPC/Slice_0/Anticyclones"
         ],
         [
            "$build_dir/Inst_eddies/inst_eddies",
            "$src_dir/Inst_eddies/Tests/Input/h_2006_01_01_coarse.nc",
            "$src_dir/Inst_eddies/Tests/Input/uv_2006_01_01_coarse.nc"
         ]
      ]
   },
   "Extr_proj": {
      "description": "Create shapefile extr_proj.",
      "input": "&main_nml date = 20454, grid_lon_lat = f/\n",
      "create_file": [
         "config_nml.txt",
         "&config_nml /\n"
      ],
      "symlink": [
         [
            "$src_dir/Inst_eddies/Tests/Input/Region_1/outside_points_get_1_outerm.csv",
            "outside_points.csv"
         ]
      ],
      "commands": [
         [
            "mkdir",
            "-p",
            "SHPC/Slice_0/Cyclones"
         ],
         [
            "$build_dir/Inst_eddies/Tests/test_get_1_outerm",
            "$src_dir/Inst_eddies/Tests/Input/Region_1/huv_region_1_2006_01_01.nc",
            "$src_dir/Inst_eddies/Tests/Input/Region_1/huv_region_1_2006_01_01.nc"
         ]
      ]
   },
   "Region_4_15_days": {
      "description": "This is used in several tests in Overlap.",
      "command": [
         "$build_dir/Inst_eddies/inst_eddies_Aviso.py",
         "--template=dt_global_allsat_phy_l4_%Y%m%d_20210726.nc",
         "--last_date=2006-01-15",
         "--bbox",
         "16.125",
         "20.875",
         "-38.875",
         "-34.125",
         "$Aviso_DT_dir/dt_global_allsat_phy_l4_20060101_20210726.nc",
         "0"
      ],
      "create_file": [
         "config_nml.txt",
         "&config_nml /\n"
      ]
   }
}