Docker-in-Docker (DinD) capabilities of public runners deactivated. More info

Commit 6e20587b authored by MAILLER Sylvain's avatar MAILLER Sylvain 🦃
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Tracer config file and other run configuration files

parent 78d28175
# Name Type Lon. Lat. First date Last date Mass(ton) Zmin(m) Zmax(m) MolMass
GTRC1 1 -72.2 -40.5 2011060419 2011060500 5.21e+4 8000. 11000. 64.
GTRC1 1 -72.2 -40.5 2011060500 2011060507 8.33e+4 8000. 11000. 64.
GTRC1 1 -72.2 -40.5 2011060508 2011060519 5.50e+4 8000. 11000. 64.
GTRC1 1 -72.2 -40.5 2011060520 2011060600 1.00e+4 8000. 11000. 64.
GTRC1 1 -72.2 -40.5 2011060600 2011060607 2.00e+4 8000. 11000. 64.
GTRC1 1 -72.2 -40.5 2011060608 2011060619 3.00e+4 8000. 11000. 64.
GTRC1 1 -72.2 -40.5 2011060620 2011060700 1.00e+4 8000. 11000. 64.
#------------------------------------------------------------------------------------
# CHIMERE parameter file
# Separate parameters for multiple runs with commas, e.g., Nested... : no, yes
# Only use absolute paths for files and directories
#------------------------------------------------------------------------------------
runs : 1
#------------------------------------------------------------------------------------
# Analysis or forecast
[$forecast] Forecast(1) or analysis(0) run : 0
# CHIMERE simulation domain, time-step
[$nested] Nested run? (yes/no) : no
[$dom] CHIMERE domain : PUY60
[$ntotprocs] Number of available processors : 45
[$ratioproc] Ratio procs #chimere/#wrf (real) : 1
[$nlevels] Number of vertical layers : 40
[$top_chimere_pressure] Top layer pressure : 120
[$first_layer_pressure] First layer pressure : 998
# Simulation output parameters
[$online] on-line [1] or off-line [0] modeling : 0
[$cpl_case] coupling case : 1
[$lab] Simulation label : PUY60-tier1
[$clab] Coarse domain label : none
[$sim] Current run label : ${idatestart}_${nhours}_${lab}
[$simuldir] Simulation output directory : /ccc/scratch/cont003/shr10274/maillers/CHIMOUT-${lab}
[$outloc] Write outfiles locally during run (0/1) : 0
# Output parameters
[$accur] Output species detailed (low/full) : full
[$nsconcs] Conc. save freq. (hr), file end... : 24
[$nsdepos] Deposition save freq. (hr), file dep... : 6
[$accurmet] Meteo detailed (low/medium/full) : medium
#------------------------------------------------------------------------------------
# CHIMERE mandatory databases
[$bigfilesdir] Big files (AEROMIN.bin, etc) : /ccc/work/cont003/shr10274/shr10274/BIGFILES
[$luname] Land Cover GLCF/GLOBCOVER/USGS : USGS
[$landcover_dir] Land Cover directory : ${bigfilesdir}/LANDCOVER
[$megan_data] MEGAN data root : ${bigfilesdir}/MEGAN
[$imegan] MEGAN database choice (1=2.5', 2=30") : 2
[$emissdir] Anthropogenic emission Dir (stage 1) : /data/PLT8/pub/menut/EMISURF_OUT/DCWAc2_htap/EMI_2010
[$fire_emissdir] Fire emission Dir (stage 1) : /data/PLT8/pub/menut/outemiFIRES_DCWAc2/2016
#------------------------------------------------------------------------------------
# Emissions
[$emistyp] Anthropogenic emission format type : emisurf
[$asurfemis] anthro surface emissions? (1/0) : 0
[$apointemis] anthro point emissions? (1/0) : 0
[$iuse_firemis] Fire emissions? (1/0) : 0
[$ifirevprof] Fire vertical profile shape (1/2/3) : 1
[$iusebemis] Biogenic emissions? (1/0) : 0
[$iusedms] DMS marine emissions? ([1-4]/0) : 0
[$iusedust] Mineral dust emissions? (0-3) : 0
[$icuth] u* threshold scheme : 1
[$ifluxv] vertical dust flux scheme : 2
[$ifecan] Use of soil moisture [1] or not [0] : 1
[$iusesalt] Sea salts emissions? (0/1/2/3/4) : 0
[$ilinox] NOx lightning : 0
#------------------------------------------------------------------------------------
# Sensitivity factors
[$factaemis] Factor on anthro surface emissions : 1.0
[$factfemis] Factor on fire emissions (real) : 1.0
[$factbemis] Factor on biogenic emissions (real) : 1.0
[$factdms] Factor on DMS emissions (real) : 1.0
[$factdemis] Factor on dust emissions (real) : 1.0
[$factsemis] Factor on salt emissions (real) : 1.0
[$factlinox] NOx lightning factor : 1.0
#------------------------------------------------------------------------------------
# Meteorology Driver
# Meteo grib files in either offline or online runs (WRF/ecm)
[$dgrb] Dir for input meteo grib files : /ccc/work/cont003/gen10274/maillers/IFS
# in case of offline
[$meteo] What is your meteo driver (WRF,ecm) : ecm
[$metdom] Meteo driver domain : GLOB
[$meteo_DIR] Where are your meteo files : /ccc/work/cont003/gen10274/maillers/IFS
[$meteo_file] Prefix of meteo files :
[$wrf_geog] If WRF, where is the geo_em file :
# in case of online
[$geodata] Static input data for WPS : /ccc/work/cont003/shr10274/shr10274/geog_data_v4.1
[$wrfrestart] WRF restart param (true / false) : optional
[$wrf_restart_dir] WRF restart dir : ${simuldir}
[$wrf_tstep_grid] WRF default is 6 in 6*dx : 1
#------------------------------------------------------------------------------------
# Chemical boundary conditions
# 0 - do not use
# 1 - use and build
# 2 - check if files exist and build only
[$iusebound] Use and build bound conditions? (0/1/2) : 0
[$iuseini] Use and build init. conditions? (0/1/2) : 1
[$nest_topconc] Use global top conc? : 1
[$inibc3d] Output 3D fields from init. conditions? : 0
[$bcdir] Boundary conditions : ${bigfilesdir}
[$bcgas] BC Gaseous Species : LMDz4_INCA3_96x95x19_v2013c
[$bcgasdt] Use of gas bc (0/1/2) : 1
[$bcaer] BC non-dust Aerosols : LMDz4_INCA3_96x95x19_v2013c
[$bcaerdt] use of aer bc (0/1/2) : 1
[$bcdust] BC Dust : GOCART
[$bcdustdt] Use of dust bc (0/1/2) : 1
# Chemistry and deposition / resuspension options
[$mecachim] Chemistry mechanism (0..2) : 0
[$aero] Chemically-active aerosols (1/0) : 0
[$nbins] Number of aerosol size sections : 10
[$carb] Include carboneceous species? : 0
[$soatyp] Secondary organic aerosol scheme (0..2) : 0
[$trc] Include tracers? : 1
[$nequil] ISORROPIA coupling (1) / tabulation (0) : 0
[$npeq] equilibrium calc freq (phys steps, < 5) : 1
[$ithermo] Choice of SOA thermodynamics (0..3) : 1
[$iadrydep] Aero dry deposition (1=Wesely, 2=Zhang) : 2
[$resusp] Resuspension [1] or not [0] : 0
# Numerical solution parameters
[$dtphys] Physical time steps (in mn) : 20
[$dtchem] Chemical time step (in mn) : 20
[$ngs] Number of Gauss-Seidel iterations : 2
[$nsu] - during spinup : 3
[$irs] - number of spinup hours : 1
[$iadv] Advection scheme (0..2) : 2
[$iadvv] Vertical advection scheme (0..2) : 1
[$imethod] twostep[0] or splitting[1] : 0
[$splitcfl] (if splitting) use CFL for trsp only (0..1) : 1
[$is_diagwinw] Diagnose w from u and v : .false.
[$cflmax] Maximal permitted CFL value : .8
# CHIMERE Subgrid Processes
[$ideepconv] Deep convection activation (1/0) : 1
[$urbancorr] Urban correction [1] or not [0] : 0
[$ilidar] Lidar profiles [1] or not [0] : 0
[$idiagblh] Use BLH of meteo driver (0) or diagnose (1) : 0
[$idiagustar] Use u* of meteo driver (0) or diagnose (1) : 0
[$idiagshf] Use Surf.Heat Flux of meteo (0) or diag (1) : 0
[$sgmodel] Subgrid scale model for anthropogenic emi : 0
#------------------------------------------------------------------------------------
# Flags whether to run individual dynamic interfaces and the Core
[$imakechemprep] Make chemical input data (0:2) : 1
[$istopchemprep] Make chemical input data and exit : 0
[$istopdom] Make domains and exit : 0
[$imakemeteo] Run meteo interface? (0-2) : 1
[$imakeaemis] Build anthropogenic emissions? (0-2) : 1
[$imakefemis] Build fire emissions? (0-2) : 1
[$imakerun] Run Chimere Core? (0-1) : 1
[$runwrfonly] Run WRF without CHIMERE : 0
[$chimverb] Print on screen verbose or not [0:5] : 2
[$timeverb] Print exec time on screen [0:5] : 0
# Miscellaneous
[$do_clean] Clean mode (full, light, or none) : none
#!/bin/bash
#MSUB -r dom #Request name
#MSUB -n 45 #Number of procs
#MSUB -q skylake #Partition
#MSUB -T 86400 #86400 Elapsed time limit in seconds (max=24 hours)
#MSUB -o Job_OUT/chimere_%I.out #Standard output
#MSUB -e Job_OUT/chimere_%I.err #Error output
#MSUB -A gen10274 #Nom du projet qui sera comptabilise
#MSUB -@ sylvain.mailler@lmd.polytechnique.fr
#MSUB -x #requests for exclusive use of the allocated nodes
#MSUB -m work,scratch
set -x
cd ${BRIDGE_MSUB_PWD}
cat chimere.par.puyehue-tier2 | sed 's/_IUSEINI_/0/g' > chimere.par.puyehue-tier2.first
cat chimere.par.puyehue-tier2 | sed 's/_IUSEINI_/1/g' > chimere.par.puyehue-tier2.next
# ./chimere.sh chimere.par.puyehue-tier2.first f 2011060400 24
# ./chimere.sh chimere.par.puyehue-tier2.next f 2011060500 24
# ./chimere.sh chimere.par.puyehue-tier2.next f 2011060600 24
./chimere.sh chimere.par.puyehue-tier2.next f 2011060700 24
./chimere.sh chimere.par.puyehue-tier2.next f 2011060800 24
./chimere.sh chimere.par.puyehue-tier2.next f 2011060900 24
./chimere.sh chimere.par.puyehue-tier2.next f 2011061000 24
./chimere.sh chimere.par.puyehue-tier2.next f 2011061100 24
./chimere.sh chimere.par.puyehue-tier2.next f 2011061200 24
./chimere.sh chimere.par.puyehue-tier2.next f 2011061300 24
./chimere.sh chimere.par.puyehue-tier2.next f 2011061400 24
./chimere.sh chimere.par.puyehue-tier2.next f 2011061500 24
./chimere.sh chimere.par.puyehue-tier2.next f 2011061600 24
./chimere.sh chimere.par.puyehue-tier2.next f 2011061700 24
./chimere.sh chimere.par.puyehue-tier2.next f 2011061800 24
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