Merge branch 'automatic_run' into 'master'

Semi-automatic execution of the Valentin's configuration on JeanZay with one script

See merge request ipsl/projets/dynamico/awaca/lmdz-configurations!1

.gitignore

+temp/
\ No newline at end of file

run_valentin_configuration.sh

+#!/bin/bash
+# This scripts tries to perform the minimal amount of work to run the configuration by Valentin. Give it a try!
+# For each stage run this script with the stage id [1..5].
+# Some stages create batch jobs, make sure they finish before moving on!
+ROOT=$(pwd)
+CFG=$ROOT/valentin
+
+case "$1" in
+    1) # Preparation
+        echo ">>>> Creating temp directory"
+        rm temp/ -rf
+        mkdir temp/
+        echo ">>>> Downloading TUTORIAL_PROD from an accessible source"
+        pushd temp/
+        wget https://www.lmd.jussieu.fr/~lmdz/pub/Training/tutorial_prod_v20220106.tar
+        tar -xvf tutorial_prod_v20220106.tar
+        # The TEST_PROD directory must be in the $STORE path, otherwise, running the main.sh script fails
+        mv TEST_PROD/ $STORE/TEST_PROD
+        popd
+        rm temp/ -rf
+        echo ">>>> Copying scripts, configurations, and other files by Valentin"
+        pushd $STORE/TEST_PROD
+        cp $CFG/*.sh .
+        cp $CFG/script_SIMU .
+        cp $CFG/DEF/* DEF/
+        cp $CFG/XMLfilesLMDZ/* DEF/XMLfilesLMDZ/
+        # If we leave year after >2018, then, we need to perform some additional steps (create_amip.sh)
+        echo ">>>> Changing simulation period to 201501-201502 in main.sh"
+        sed -i '128 c\mthini=201501' main.sh
+        sed -i '129 c\mthend=201502' main.sh
+        echo ">>>> Changing simulation period to 201501-201502 in era2gcm.sh"
+        sed -i '22 c\mth_i=201501' era2gcm.sh
+        sed -i '23 c\mth_f=201502' era2gcm.sh
+        popd ;;
+    2) # Installation
+        pushd $STORE/TEST_PROD
+        echo ">>>> Preparing main_install.sh script for the LMDZ installation step"
+        cp main.sh main_install.sh
+        sed -i '51 c\install="-install"' main_install.sh
+        sed -i '97 c\init=1' main_install.sh
+        echo ">>>> Running the installation (wait until the job has finished!)"
+        ./main_install.sh
+        popd ;;
+    3) # Initialisation
+        echo ">>>> Updating the LMDZ to the newest version"
+        pushd $WORK/LMDZ20210927.trunk/modipsl/modeles/LMDZ/
+        module load svn/1.9.7
+        svn update
+        popd
+        echo ">>>> Preparing main_init.sh script for the creation of initial data"
+        pushd $STORE/TEST_PROD
+        cp main.sh main_init.sh
+        # Prepare main_init.sh for the initialisation and run it!
+        sed -i '97 c\init=1' main_init.sh
+        # Removing INIT files as we want to regenerate them
+        rm INIT/ -rf
+        echo ">>>> Running the initialisation"
+        ./main_init.sh
+        popd ;;
+    4) # Data preparation
+        pushd $STORE/TEST_PROD
+        echo ">>>> Preparing the ERA (or other) data"
+        ./era2gcm.sh
+        popd ;;
+    5) # Running simulation
+        pushd $STORE/TEST_PROD
+        echo ">>>> Running the configuration"
+        ./main.sh
+        popd ;;
+esac