testing : add arch_IRENE.sh

test/bash/arch-X64_IRENE.sh

+#!/bin/bash
+
+# This script provides site-specific functions
+# called by the site-independent scripts
+# create_runs.sh and submit.sh
+
+# NB : we must use the queue 'normal' because there seems to be a limit
+# on the number of jobs that can be submitted to queue 'test'
+
+#----------------------------- split_XXX ----------------------------
+
+function split_mpi_32() {
+    setvar nbp 33 nsplit_i 2 nsplit_j 4
+}
+function split_serial_40() {
+    setvar nbp 41 nsplit_i 2 nsplit_j 2
+}
+function split_mpi_40() {
+    setvar nbp 41 nsplit_i 2 nsplit_j 2
+}
+function split_mpi_80() {
+    setvar nbp 81 nsplit_i 4 nsplit_j 2
+}
+function split_mpi_omp_40() {
+    setvar nbp 41 nsplit_i 2 nsplit_j 2 omp_level_size 4
+}
+
+#----------------- job submission ------------------
+
+function submit_job_X64_IRENE() # $1=script $* = SLURM OPTIONS
+{
+    TMP=$(mktemp)
+    ccc_msub $1 > $TMP
+    cat $TMP 1>&2
+    cat $TMP | awk '{print $NF }'
+    rm -f $TMP
+}
+
+#------------------------------ job_XXX -----------------------------
+
+# Serial jobs
+function job_serial() { # EXP_NAME
+    job_X64_IRENE $1 1 1 "./gcm.exe"
+}
+function job_serial_40() { # EXP_NAME
+    job_serial $1
+}
+
+# MPI jobs
+function job_mpi() { #EXP_NAME NB_MPI
+    job_X64_IRENE $1 $2 1 "ccc_mprun ./gcm.exe"
+}
+function job_mpi_32() { # EXP_NAME
+    job_mpi $1 80
+}
+function job_mpi_40() { # EXP_NAME
+    job_mpi $1 40
+}
+function job_mpi_80() { # EXP_NAME
+    job_mpi $1 80
+}
+
+# MPI-OMP jobs
+function job_mpi_omp() { #EXP_NAME NB_MPI NB_OMP
+    job_X64_IRENE $1 $2 $3 "ccc_mprun ./gcm.exe"
+}
+function job_mpi_omp_40() { # EXP_NAME
+    job_mpi_omp $1 40 4
+}
+
+# Generic
+function job_X64_IRENE() { # EXP_NAME MPI_TASKS OMP_TASKS MPIRUN
+    cat <<EOF
+#!/bin/bash
+## Request name
+#MSUB -r $1
+## Number of tasks (=MPI processes) to use
+#MSUB -n $2
+## Number of OpenMP threads
+#MSUB -c $3
+## Elapsed time limit in seconds
+#MSUB -T 300
+# account, partition (Xeon/KNL)
+#MSUB -A $project
+#MSUB -q skylake
+# Mount $WORK on compute node
+#MSUB -m work
+## Quality of Service required (long [3 days], normal [1 day], test [30 min])
+#MSUB -Q normal
+
+export OMP_NUM_THREADS=$3
+export OMP_STACKSIZE=128M
+
+cd \${BRIDGE_MSUB_PWD} 
+
+$(cat $ROOT/DYNAMICO/arch/arch-X64_IRENE.env)
+
+rm -rf gcm.log logs *.nc netcdf
+date > gcm.log
+ulimit -s unlimited
+$4 >> gcm.log
+date >> gcm.log
+
+mkdir -p netcdf
+cp gcm.log *.def netcdf
+mv *.nc netcdf
+
+mkdir -p logs
+cp *.xml logs
+cp -pr $(readlink -e gcm.exe) logs
+cp -pr $(readlink -e build/src) logs
+mv xios_client_*.err xios_client_*.out gcm.log logs
+
+EOF
+}
+
+#------------------------------ post-processing job -----------------------------
+
+function job_post_X64_IRENE() # LIST
+{
+    DEPLIST=afterany
+    for ID in $* ; do
+	DEPLIST="$DEPLIST:$ID"
+    done
+    cat <<EOF
+#!/bin/bash
+## Request name
+#MSUB -r testing
+#MSUB -n 1
+## Elapsed time limit in seconds
+#MSUB -T 600
+#MSUB -q standard 
+#MSUB -A $project
+#MSUB -q skylake
+#MSUB -m work
+#MSUB -E "--dependency=$DEPLIST"
+## Number of tasks (=MPI processes) to use
+## Quality of Service required (long [3 days], normal [1 day], test [30 min])
+#MSUB -Q normal
+
+export OMP_NUM_THREADS=1
+# this script is submitted from $ROOT/logs
+cd \${BRIDGE_MSUB_PWD}/..
+
+$(cat $ROOT/DYNAMICO/arch/arch-X64_IRENE.env)
+module load python
+
+bash/post.sh
+EOF
+}