Commit b7c9e8a7 authored by Marco Leoni's avatar Marco Leoni
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parent 51beaeba
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in 9 minutes and 24 seconds
FROM jupyter/scipy-notebook
# Use apt to install rsync, ssh, less, tree
USER root
RUN apt-get update && \
apt-get install -y --no-install-recommends openssh-client rsync unison less tree curl gdb imagemagick && \
apt-get clean && \
rm -rf /var/lib/apt/lists/*
RUN echo 'export PS1=`echo $JUPYTERHUB_USER| sed s/`"@jupyterhub \w \$ "' > /root/.bash_profile
# Use conda to install the software stack from the relevant repositories
RUN conda update -n base -c conda-forge conda
RUN conda install -n base -c conda-forge mamba
RUN for REPO in \ \ \ \ \ \ \
; do \
echo =================================================;\
echo Installing software stack for: ;\
echo $REPO ;\
echo =================================================;\
git clone $REPO repo && \
(cd repo; test -d binder && cd binder; mamba env update -n base -f environment.yml) && \
rm -rf repo || \
break 0; \
# R: potential users at STAPS
# FactoMineR package: used by Albane Saintenoy and students for PCA / clustering
# in the course "Traitement de données hydrologiques" of M2 HSS
RUN mamba install -c conda-forge r r-essentials r-factominer
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