Add the script fix_affiliation_keys_0960.py to update existing database.

scripts/affiliation_keys_0960.sql

+-- MySQL dump 10.14  Distrib 5.5.43-MariaDB, for Linux (x86_64)
+--
+-- Host: localhost    Database: test_publications
+-- ------------------------------------------------------
+-- Server version	5.5.43-MariaDB
+
+/*!40101 SET @OLD_CHARACTER_SET_CLIENT=@@CHARACTER_SET_CLIENT */;
+/*!40101 SET @OLD_CHARACTER_SET_RESULTS=@@CHARACTER_SET_RESULTS */;
+/*!40101 SET @OLD_COLLATION_CONNECTION=@@COLLATION_CONNECTION */;
+/*!40101 SET NAMES utf8 */;
+/*!40103 SET @OLD_TIME_ZONE=@@TIME_ZONE */;
+/*!40103 SET TIME_ZONE='+00:00' */;
+/*!40014 SET @OLD_UNIQUE_CHECKS=@@UNIQUE_CHECKS, UNIQUE_CHECKS=0 */;
+/*!40014 SET @OLD_FOREIGN_KEY_CHECKS=@@FOREIGN_KEY_CHECKS, FOREIGN_KEY_CHECKS=0 */;
+/*!40101 SET @OLD_SQL_MODE=@@SQL_MODE, SQL_MODE='NO_AUTO_VALUE_ON_ZERO' */;
+/*!40111 SET @OLD_SQL_NOTES=@@SQL_NOTES, SQL_NOTES=0 */;
+
+--
+-- Table structure for table `affiliation_keys`
+--
+
+/*!40101 SET @saved_cs_client     = @@character_set_client */;
+/*!40101 SET character_set_client = utf8 */;
+CREATE TABLE IF NOT EXISTS `affiliation_keys` (
+  `id` int(11) NOT NULL AUTO_INCREMENT,
+  `key_u` varchar(255) NOT NULL,
+  `key_v` varchar(255) DEFAULT NULL,
+  PRIMARY KEY (`id`)
+) ENGINE=InnoDB AUTO_INCREMENT=10 DEFAULT CHARSET=utf8;
+/*!40101 SET character_set_client = @saved_cs_client */;
+
+-- Dump completed on 2016-09-21 14:49:52

scripts/fix_affiliation_keys_0960.py

+# -*- coding: utf-8 -*-
+""" NAME
+        fix_affiliation_keys_0960 -- create the affiliation_keys table
+
+    SYNOPSIS
+        fix_affiliation_keys_0960
+
+    DESCRIPTION
+        A new mechanism was introduced in version 0.9.6.0 in order to
+        deal with affiliation. It relies on a new database table
+        affiliation_keys. Preferences inspihep_institure_id and
+         add_rules_reg_institute are obsolete and have to be removed.
+
+        The aim of this script, is to update existing database.
+
+    OPTIONS
+
+    EXAMPLE
+
+        > cd ...limbra/scripts
+        > ./run script fix_affiliation_keys_0960.py
+        > ./run -S limbra_cppm script  fix_affiliation_keys_0960.py
+        > ./run loop fix_affiliation_keys_0960
+
+    AUTHOR
+        R. Le Gac -- Sep 2016
+
+"""
+
+if __name__ == "__main__":
+
+    import sys
+    import os
+
+    # protection: exit if the table affiliation_keys exists
+    if "affiliation_keys" in db.tables:
+        print "\n\tThe table affiliation_keys already exists. Exit\n"
+        sys.exit(1)
+
+    # create the database table affiliation_keys from SQL statement
+    print "\n\tCreate the table affiliation_keys"
+    fn = os.path.join(os.getcwd(),
+                      "applications",
+                      request.application,
+                      "scripts",
+                      "affiliation_keys_0960.sql")
+    with open(fn) as fi:
+        db.executesql(fi.read())
+
+    # remove preferences inspihep_institure_id, add_rules_reg_institute
+    for pref in ("inspihep_institure_id", "add_rules_reg_institute"):
+        print "\tRemove preference", pref
+        db(db.preferences.property == pref).delete()
+        db.commit()
+
+    # exit
+    print "\n\tEnd of script\n"
+    sys.exit(0)
\ No newline at end of file