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merge-relaxation
595ee406
·
Make Relaxed model implementation consistent with the new refactored API
·
Apr 13, 2024
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597c233b
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enabled ANOVA filtering for continuous mode
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Mar 25, 2024
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revbayes_pelican
6ec1033f
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Model 0 (homogeneous equilibrium frequencies throughout the tree) runs, don't...
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Mar 21, 2024
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generation-test-revbayes
159d2911
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test generation for revbayes
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Mar 21, 2024
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discrete-hidden-state
713b1e5e
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AAGTR.Discrete_trait_with_hidden_state: added simulator
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Mar 12, 2024
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test-refactoring
4c65c8fb
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lib fully refactored
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Mar 08, 2024
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nl-optimizer-bench
b02113e7
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optimizer choice in AAGTR
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Nov 28, 2023
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continuous-trait-paper
edfda247
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fixed biotk and phylogenetics versions
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Sep 27, 2023
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site-scenario-figure
3ab1acd8
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added missing module
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Sep 26, 2023
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relaxed-profile
9a44ec20
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Implementation of Relaxed model with best performances
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Jun 14, 2023
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filter4continuous-phenotype-redux
9cc8d0d1
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exp: added ANOVA for continuous benchmark
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May 20, 2023
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filter4continuous-phenotype
86ea0b85
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Store_cmd: added graph for continuous site plot
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Mar 11, 2023
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calibration
e6966463
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Figure improvements
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Mar 06, 2023
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ppelican
f6b4a600
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loss: minor optimization
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Feb 05, 2023
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thesis
5f8d15bc
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Update sparse MLE figure
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Dec 05, 2022
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em-postinference-filtering
4286f3be
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Back up for unused Site_model_with_filtering
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Sep 17, 2022
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em-postinference-ph
0163f67a
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EM: global theta, local q, no Z
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Sep 17, 2022
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em-postinference
90d38ac7
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Added Rmd and data to perform enrichment analyses on lists of genes.
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Sep 17, 2022
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relaxation
625fa1c5
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Update wrt Phylogenetics.CTMC
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Sep 14, 2022
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permutation-test-demo
a721b99d
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working mapping-based permutation test
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Aug 30, 2022
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