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multinomial-weighting
87d28870
·
with a poor man's holdout
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Nov 11, 2021
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multi-multinomial
a1ce8ac3
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fix R script for train/test
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Nov 14, 2021
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alidbstats
5cc594c8
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new alidbstats command
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Dec 19, 2021
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continuous-trait-model
b5d6e277
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CLI implementation for continuous model scan
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Apr 28, 2022
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laplace-approx
ec56b6e0
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test M2 marginal lik vs monte carlo estimate
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May 13, 2022
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collapse
6c3e1e5d
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Add state collapse ML test
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May 17, 2022
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estimation-tests
5d135619
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Refactor estimation tests
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Jun 29, 2022
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mappings
6ec8e26d
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AAGTR.Model3: fixed edge cases for mapping
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Aug 25, 2022
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permutation-test-demo
a721b99d
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working mapping-based permutation test
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Aug 30, 2022
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relaxation
625fa1c5
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Update wrt Phylogenetics.CTMC
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Sep 14, 2022
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em-postinference
90d38ac7
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Added Rmd and data to perform enrichment analyses on lists of genes.
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Sep 17, 2022
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em-postinference-ph
0163f67a
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EM: global theta, local q, no Z
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Sep 17, 2022
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em-postinference-filtering
4286f3be
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Back up for unused Site_model_with_filtering
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Sep 17, 2022
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thesis
5f8d15bc
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Update sparse MLE figure
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Dec 05, 2022
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ppelican
f6b4a600
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loss: minor optimization
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Feb 05, 2023
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calibration
e6966463
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Figure improvements
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Mar 06, 2023
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filter4continuous-phenotype
86ea0b85
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Store_cmd: added graph for continuous site plot
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Mar 11, 2023
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filter4continuous-phenotype-redux
9cc8d0d1
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exp: added ANOVA for continuous benchmark
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May 20, 2023
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relaxed-profile
9a44ec20
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Implementation of Relaxed model with best performances
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Jun 14, 2023
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site-scenario-figure
3ab1acd8
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added missing module
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Sep 26, 2023
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