bppsuite.mli 1.05 KB
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open Bistro.Std
open Bistro_bioinfo.Std
open File_formats

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type bppseqgen_multi_profiles

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val bppseqgen :
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  ?descr : string ->
  nb_sites:int ->
  tree:nhx workflow ->
  config:Bistro.Template.t list ->
  nucleotide_fasta workflow

val bppseqgen_multi_profiles :
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  ?descr : string ->
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  profile_f: text_file workflow ->
  profile_c: text_file workflow ->
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  nb_sites:int ->
  tree:nhx workflow ->
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  config:Bistro.Template.t list ->
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  ne_c: float ->
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  ne_a: float ->
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  seed:int ->
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  bppseqgen_multi_profiles directory workflow

val bppseqgen_multi_profiles_get_fa :
  bppseqgen_multi_profiles directory workflow ->
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  nucleotide_fasta workflow
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val bppseqgen_multi_profiles_get_info :
  bppseqgen_multi_profiles directory workflow ->
  text_file workflow

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val fna2faa :
  fna:nucleotide_fasta workflow ->
  aminoacid_fasta workflow
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val fna2phy :
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  fna: nucleotide_fasta workflow ->
  nucleotide_phylip workflow
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val faa2phy :
  faa: aminoacid_fasta workflow ->
  aminoacid_phylip workflow

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val paste_fna:
  fna_l: nucleotide_fasta workflow list ->
  nucleotide_fasta workflow