multinomial.ml

open Core
open Bistro
open Bistro.Shell_dsl
open File_formats

let multinomial ~(tree_sc:_ pworkflow) ~(faa:aminoacid_fasta pworkflow) : [`multinomial] dworkflow =
  let img = Env.env_py in
  Workflow.shell ~descr:("calc_multinomial") [
    mkdir_p dest;
    cmd "python" ~img [
      file_dump (string Scripts.calc_multinomial) ;
      opt "-t" dep tree_sc;
      opt "-a" dep faa;
      opt "-o"  ident (dest // "out.tsv") ;
    ]
  ]

let results w =
  Workflow.select w ["out.tsv"]