• Philippe Veber's avatar
    orthomam: new construction of the concatenate · 74d3d8d2
    Philippe Veber authored
    select codon columns of alignments (of size 0 mod 3) in orthomam that
    are quasi full, then randomly select n of this set. By "quasi full", I
    mean columns that have a non-stop codon for all species but a few. For
    "a few = 0", that led to about 3000 sites, "a few = 1" about 25000 and
    "a few = 2" about 90000.
orthomam.ml 13.8 KB