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  • Philippe Veber's avatar
    Simulator: save distance btw profiles at leaves · a897beaf
    Philippe Veber authored
    this commit introduces a measure of how difficult a particular
    parameter setting is in average. it computes an expected profile at
    the convergent leaves given branch lengths (actually the height of the
    tree is taken, which is an upper bound).
    
    Note that I suppressed a check that used to avoid simulations with two
    profiles having the same preferred amino acid.
    a897beaf