Commit 072697df authored by Carine Rey's avatar Carine Rey
Browse files

use better aa profiles

parent 6970e047
......@@ -29,19 +29,19 @@ push_docker:
test:
cd example && \
reviewphiltrans pipeline --outdir outdir --tree-dir trees --profile-fn aa_fitness/aafitness1_first_100_freq_ok_bpp.csv --preview --np 4 && \
reviewphiltrans pipeline --outdir outdir --tree-dir trees --profile-fn aa_fitness/tiragesBloomK30.tsv --preview --np 4 && \
mv dag.dot dagtest.dot && \
dot -Tsvg dagtest.dot -o dagtest.svg
analyses_test:
cd example && \
reviewphiltrans pipeline --outdir outdir_analyses_test --tree-dir trees4analyses --profile-fn aa_fitness/aafitness1_first_100_freq_ok_bpp.csv --preview --np 4 && \
reviewphiltrans pipeline --outdir outdir_analyses_test --tree-dir trees4analyses --profile-fn aa_fitness/tiragesBloomK30.tsv --preview --np 4 && \
mv dag.dot daganalyses_test.dot && \
dot -Tpdf daganalyses_test.dot -o daganalyses_test.pdf
analyses:
cd example && \
reviewphiltrans pipeline --outdir outdir_analyses --tree-dir trees4analyses --profile-fn aa_fitness/aafitness1_first_100_freq_ok_bpp.csv --np 4 && \
reviewphiltrans pipeline --outdir outdir_analyses --tree-dir trees4analyses --profile-fn aa_fitness/tiragesBloomK30.tsv --np 4 && \
mv dag.dot daganalyses.dot && \
dot -Tpdf daganalyses.dot -o daganalyses.pdf
......
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