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Commit 0afb7a39 authored by Philippe Veber's avatar Philippe Veber
Browse files

Bppsuite: removed redundant argument name

parent 21224828
......@@ -166,7 +166,7 @@ let conf_file_bppseqman_fna2faa ~fna =
|}
]
let fna2faa ~(fna:nucleotide_fasta pworkflow) : aminoacid_fasta pworkflow =
let fna2faa (fna : nucleotide_fasta pworkflow) : aminoacid_fasta pworkflow =
Workflow.shell ~descr:"bppsuite.fna2faa" [
cmd "bppseqman" ~img [
assign "param" (file_dump (conf_file_bppseqman_fna2faa ~fna)) ;
......
......@@ -21,7 +21,7 @@ module Bppseqgen : sig
end
val fna2faa :
fna:nucleotide_fasta pworkflow ->
nucleotide_fasta pworkflow ->
aminoacid_fasta pworkflow
val fna2phy :
......
......@@ -58,7 +58,7 @@ let derive_from_model ~model ~input_tree ~tree_dataset ~tree_prefix ~profile ~se
let run_fna = Bppsuite.Bppseqgen.multi_profiles ~descr ~tree_dataset ~hypothesis:model ~profile_f ~profile_c ~seed in
let fna = Bppsuite.Bppseqgen.alignment run_fna in
let fna_infos = Some (Bppsuite.Bppseqgen.info run_fna) in
let faa = Bppsuite.fna2faa ~fna in
let faa = Bppsuite.fna2faa fna in
let ready_dataset = { Ready_dataset.input_tree = input_tree ; tree_dataset ; fna; faa; fna_infos } in
{ Dataset.model_prefix; is_real= false; tree_prefix; dataset = ready_dataset; seed }
......
......@@ -17,7 +17,7 @@ let of_raw ?(descr="") (raw_dataset : Raw_dataset.t) =
let fna = raw_dataset.fna in
let fna_infos = raw_dataset.fna_infos in
let tree_dataset = Tree_dataset.prepare ~descr input_tree in
let faa = Bppsuite.fna2faa ~fna in
let faa = Bppsuite.fna2faa fna in
{ input_tree; tree_dataset ; fna; faa; fna_infos}
......
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