Commit 186f64bc authored by Carine Rey's avatar Carine Rey
Browse files

add data for the analyse

parent 5379230d
...@@ -30,7 +30,12 @@ push_docker: ...@@ -30,7 +30,12 @@ push_docker:
test: test:
cd example && \ cd example && \
reviewphiltrans pipeline --outdir outdir --tree-dir trees --profile-fn aa_fitness/aafitness1_first_100_freq_ok_bpp.csv --preview --np 4 && \ reviewphiltrans pipeline --outdir outdir --tree-dir trees --profile-fn aa_fitness/aafitness1_first_100_freq_ok_bpp.csv --preview --np 4 && \
dot -Tpdf dag.dot -o dag.pdf dot -Tsvg dag.dot -o dag.svg
analyses:
cd example && \
reviewphiltrans pipeline --outdir outdir_analyses --tree-dir trees4analyses --profile-fn aa_fitness/aafitness1_first_100_freq_ok_bpp.csv --np 4 && \
dot -Tpdf dag.dot -o dag.pdf
clean_test: clean_test:
rm -r example/_bistro || exit 0 rm -r example/_bistro || exit 0
......
(ornithorhynchus_anatinus:0.1278[&&NHX:Condition=0],(((sarcophilus_harrisii:0.06813[&&NHX:Condition=0],notamacropus_eugenii:0.07663[&&NHX:Condition=0]):0.00305[&&NHX:Condition=0],monodelphis_domestica:0.07637[&&NHX:Condition=0]):0.04008[&&NHX:Condition=0],(((loxodonta_africana:0.06161[&&NHX:Condition=0],procavia_capensis:0.07695[&&NHX:Condition=0]):0.01578[&&NHX:Condition=0],echinops_telfairi:0.09765[&&NHX:Condition=0]):0.02562[&&NHX:Condition=0],((dasypus_novemcinctus:0.07725[&&NHX:Condition=0],choloepus_hoffmanni:0.0787[&&NHX:Condition=0]):0.02781[&&NHX:Condition=0],(((((oryctolagus_cuniculus:0.07649[&&NHX:Condition=0],ochotona_princeps:0.09226[&&NHX:Condition=0]):0.02465[&&NHX:Condition=0],((((((cavia_aperea:0.01305[&&NHX:Condition=0],cavia_porcellus:0.00765[&&NHX:Condition=0]):0.06702[&&NHX:Condition=0],chinchilla_lanigera:0.06971[&&NHX:Condition=0]):0.00361[&&NHX:Condition=0],octodon_degus:0.07621[&&NHX:Condition=0]):0.00219[&&NHX:Condition=0],((heterocephalus_glaber_female:0.00045[&&NHX:Condition=0],heterocephalus_glaber_male:0.00082[&&NHX:Condition=0]):0.05583[&&NHX:Condition=0],fukomys_damarensis:0.05811[&&NHX:Condition=0]):0.01878[&&NHX:Condition=0]):0.02107[&&NHX:Condition=0],ictidomys_tridecemlineatus:0.08987[&&NHX:Condition=0]):0.00443[&&NHX:Condition=0],(dipodomys_ordii:0.10007[&&NHX:Condition=0],(jaculus_jaculus:0.09418[&&NHX:Condition=0],(nannospalax_galili:0.08691[&&NHX:Condition=0],(((((cricetulus_griseus_chok1gshd:0.00024[&&NHX:Condition=0],cricetulus_griseus_crigri:0.00077[&&NHX:Condition=0]):0.04865[&&NHX:Condition=0],mesocricetus_auratus:0.05241[&&NHX:Condition=0]):0.01641[&&NHX:Condition=0],peromyscus_maniculatus_bairdii:0.06366[&&NHX:Condition=0]):0.00279[&&NHX:Condition=0],microtus_ochrogaster:0.07073[&&NHX:Condition=0]):0.01053[&&NHX:Condition=0],(rattus_norvegicus:0.06307[&&NHX:Condition=0],(mus_pahari:0.03682[&&NHX:Condition=0],(mus_caroli:0.02056[&&NHX:Condition=0],(mus_spretus:0.01046[&&NHX:Condition=0],(mus_musculus_casteij:0.00509[&&NHX:Condition=0],(mus_musculus_pwkphj:0.00538[&&NHX:Condition=0],(mus_musculus_nzohlltj:0.00134[&&NHX:Condition=0],((mus_musculus_c57bl6nj:0.00064[&&NHX:Condition=0],mus_musculus:0.0001[&&NHX:Condition=0]):0.00094[&&NHX:Condition=0],((mus_musculus_lpj:0.00058[&&NHX:Condition=0],mus_musculus_129s1svimj:0.00049[&&NHX:Condition=0]):0.00094[&&NHX:Condition=0],(((((mus_musculus_c3hhej:0.00038[&&NHX:Condition=0],mus_musculus_cbaj:0.00054[&&NHX:Condition=0]):0.00026[&&NHX:Condition=0],mus_musculus_dba2j:0.00112[&&NHX:Condition=0]):0.00027[&&NHX:Condition=0],(mus_musculus_aj:0.00037[&&NHX:Condition=0],mus_musculus_balbcj:0.00091[&&NHX:Condition=0]):0.0001[&&NHX:Condition=0]):0.00028[&&NHX:Condition=0],mus_musculus_akrj:0.00075[&&NHX:Condition=0]):0.0001[&&NHX:Condition=0],(mus_musculus_wsbeij:0.00183[&&NHX:Condition=0],(mus_musculus_nodshiltj:0.00145[&&NHX:Condition=0],mus_musculus_fvbnj:0.00095[&&NHX:Condition=0]):0.00046[&&NHX:Condition=0]):0.0001[&&NHX:Condition=0]):0.0001[&&NHX:Condition=0]):0.00028[&&NHX:Condition=0]):0.0001[&&NHX:Condition=0]):0.00301[&&NHX:Condition=0]):0.00044[&&NHX:Condition=0]):0.00566[&&NHX:Condition=0]):0.01055[&&NHX:Condition=0]):0.01672[&&NHX:Condition=0]):0.02326[&&NHX:Condition=0]):0.01744[&&NHX:Condition=0]):0.01323[&&NHX:Condition=0]):0.00918[&&NHX:Condition=0]):0.00747[&&NHX:Condition=0]):0.00124[&&NHX:Condition=0]):0.00365[&&NHX:Condition=0]):0.00185[&&NHX:Condition=0],tupaia_belangeri:0.09888[&&NHX:Condition=0]):0.0001[&&NHX:Condition=0],(((propithecus_coquereli:0.0424[&&NHX:Condition=0],microcebus_murinus:0.0412[&&NHX:Condition=0]):0.02776[&&NHX:Condition=0],otolemur_garnettii:0.07575[&&NHX:Condition=0]):0.0073[&&NHX:Condition=0],(carlito_syrichta:0.0799[&&NHX:Condition=0],((((saimiri_boliviensis_boliviensis:0.02639[&&NHX:Condition=0],cebus_capucinus:0.02594[&&NHX:Condition=0]):0.00278[&&NHX:Condition=0],callithrix_jacchus:0.03[&&NHX:Condition=0]):0.0001[&&NHX:Condition=0],aotus_nancymaae:0.02501[&&NHX:Condition=0]):0.02357[&&NHX:Condition=0],((((((pan_paniscus:0.00307[&&NHX:Condition=0],pan_troglodytes:0.00247[&&NHX:Condition=0]):0.0043[&&NHX:Condition=0],homo_sapiens:0.00661[&&NHX:Condition=0]):0.00176[&&NHX:Condition=0],gorilla_gorilla:0.00868[&&NHX:Condition=0]):0.00836[&&NHX:Condition=0],pongo_abelii:0.01726[&&NHX:Condition=0]):0.00283[&&NHX:Condition=0],nomascus_leucogenys:0.01961[&&NHX:Condition=0]):0.01078[&&NHX:Condition=0],(((rhinopithecus_roxellana:0.0021[&&NHX:Condition=0],rhinopithecus_bieti:0.00301[&&NHX:Condition=0]):0.00939[&&NHX:Condition=0],colobus_angolensis_palliatus:0.01232[&&NHX:Condition=0]):0.00505[&&NHX:Condition=0],(chlorocebus_sabaeus:0.0117[&&NHX:Condition=0],(((mandrillus_leucophaeus:0.00665[&&NHX:Condition=0],cercocebus_atys:0.0058[&&NHX:Condition=0]):0.00064[&&NHX:Condition=0],papio_anubis:0.00666[&&NHX:Condition=0]):0.0012[&&NHX:Condition=0],((macaca_mulatta:0.00233[&&NHX:Condition=0],macaca_fascicularis:0.00215[&&NHX:Condition=0]):0.00095[&&NHX:Condition=0],macaca_nemestrina:0.00418[&&NHX:Condition=0]):0.00433[&&NHX:Condition=0]):0.00401[&&NHX:Condition=0]):0.00475[&&NHX:Condition=0]):0.01388[&&NHX:Condition=0]):0.0176[&&NHX:Condition=0]):0.02753[&&NHX:Condition=0]):0.00099[&&NHX:Condition=0]):0.01976[&&NHX:Condition=0]):0.0001[&&NHX:Condition=0],((erinaceus_europaeus:0.10146[&&NHX:Condition=0],sorex_araneus:0.10725[&&NHX:Condition=0]):0.004[&&NHX:Condition=0],((((tursiops_truncatus:0.06798[&&NHX:Condition=1:Transition=1],(((capra_hircus:0.01127[&&NHX:Condition=0],ovis_aries:0.01107[&&NHX:Condition=0]):0.01687[&&NHX:Condition=0],bos_taurus:0.02703[&&NHX:Condition=0]):0.05573[&&NHX:Condition=0],(vicugna_pacos:0.08218[&&NHX:Condition=0],sus_scrofa:0.07611[&&NHX:Condition=0]):0.00086[&&NHX:Condition=0]):0.0001[&&NHX:Condition=0]):0.01334[&&NHX:Condition=0],equus_caballus:0.0817[&&NHX:Condition=0]):0.0044[&&NHX:Condition=0],(pteropus_vampyrus:0.07973[&&NHX:Condition=0],myotis_lucifugus:0.08293[&&NHX:Condition=1:Transition=1]):0.00724[&&NHX:Condition=0]):0.0001[&&NHX:Condition=0],(felis_catus:0.06559[&&NHX:Condition=0],((mustela_putorius_furo:0.05565[&&NHX:Condition=0],ailuropoda_melanoleuca:0.0549[&&NHX:Condition=0]):0.00652[&&NHX:Condition=0],canis_familiaris:0.05998[&&NHX:Condition=0]):0.00575[&&NHX:Condition=0]):0.01641[&&NHX:Condition=0]):0.01276[&&NHX:Condition=0]):0.00018[&&NHX:Condition=0]):0.0001[&&NHX:Condition=0]):0.00274[&&NHX:Condition=0]):0.01154[&&NHX:Condition=0]):0.00682[&&NHX:Condition=0]);
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