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Commit 1a09d0ef authored by Philippe Veber's avatar Philippe Veber
Browse files

Simulation_dataset: new signature

parent a2508335
......@@ -53,3 +53,8 @@ class type aminoacid_phylip = object
inherit text
method format : [`Aminoacid]
end
class type rds = object
inherit binary_file
method format : [`rds]
end
......@@ -15,6 +15,30 @@ type tree =
branch_length2 : float ;
}
type 's benchmark = {
method_labels : string list ;
method_outputs : float option array list ;
average_precision : (float * (float * float)) list ;
site_model : 's array ;
ancestral_counts : int Phylogenetics.Amino_acid.table array ;
convergent_counts : int Phylogenetics.Amino_acid.table array ;
}
module type S = sig
type t
type site_model
include Detection_pipeline.Query with type t := t
include Detection_pipeline.S with type query := t
val alignment_plot : t -> svg file
val benchmark : t -> text file list -> site_model benchmark workflow
val rds_of_benchmark : site_model benchmark workflow -> rds file
end
let tree_workflow = function
| NHX w -> w
| Pair_tree { branch_length1 ;
......
......@@ -9,6 +9,29 @@ type tree =
branch_length2 : float;
}
type 's benchmark = {
method_labels : string list ;
method_outputs : float option array list ;
average_precision : (float * (float * float)) list ;
site_model : 's array ;
ancestral_counts : int Phylogenetics.Amino_acid.table array ;
convergent_counts : int Phylogenetics.Amino_acid.table array ;
}
module type S = sig
type t
type site_model
include Detection_pipeline.Query with type t := t
include Detection_pipeline.S with type query := t
val alignment_plot : t -> svg file
val benchmark : t -> text file list -> site_model benchmark workflow
val rds_of_benchmark : site_model benchmark workflow -> rds file
end
type t
val bppseqgen_mixed :
......
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