Commit 34f4f4a1 authored by Carine Rey's avatar Carine Rey
Browse files

use phylip-relaxed format

parent 9954c982
......@@ -12,6 +12,7 @@ import Bio
from ete3 import Tree, NodeStyle, TreeStyle, TextFace
from Bio import AlignIO
# LIGNE ESSAI
# python rename_input_tree_ali_tdg09.py -t tree.only_convergent_tags.nhx -a simulated_sequences.faa -o out
......@@ -139,7 +140,7 @@ for seq in alignment:
######## output modified alignment
output_handle = open(OutAli, "w")
AlignIO.write(alignment, output_handle, "phylip")
AlignIO.write(alignment, output_handle, "phylip-relaxed")
######### output trees for detection
......
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