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VEBER Philippe
codepi
Commits
3a8f0be2
Commit
3a8f0be2
authored
Jan 15, 2021
by
Louis Duchemin
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Setup docker for RER converge
parent
f5ba4432
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lib/rer_converge.ml
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3a8f0be2
...
...
@@ -2,6 +2,9 @@ open Core_kernel
open
Bistro
open
Bistro
.
Shell_dsl
let
img
=
[
docker_image
~
account
:
"lsdch"
~
name
:
"rerconverge"
~
tag
:
"latest"
()
]
let
phenotypes_of_convergent_species
species_list
=
let
f
=
[
%
workflow
...
...
@@ -111,6 +114,6 @@ write_tsv({{dest}}, res)
let
rer_converge
?
max_read
?
(
transform
=
`sqrt
)
?
(
weighted
=
true
)
?
(
scale
=
true
)
?
(
continuous
=
false
)
~
gene_tree_set
~
phenotype
=
Bistro_utils
.
R_script
.
workflow
~
descr
:
"rer_converge"
Bistro_utils
.
R_script
.
workflow
~
img
~
descr
:
"rer_converge"
(
script
?
max_read
~
transform
~
weighted
~
scale
~
continuous
~
gene_tree_set
~
phenotype
)
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