Docker-in-Docker (DinD) capabilities of public runners deactivated. More info

Commit 4f014a6f authored by Carine Rey's avatar Carine Rey
Browse files

rename docker image

parent 613f233d
......@@ -22,4 +22,6 @@ RUN apt-get update && \
RUN pip install --upgrade pip
RUN pip install ete3==3.0.0b35
RUN pip install scipy==0.19.1
RUN pip install biopython==1.72
......@@ -2,9 +2,9 @@
set -e
IMAGE_NAME=ete3
IMAGE_NAME=python_basics
DOCKERFILE_DIR=.
TAG=3.0.0b35
TAG=07172018
REPO=carinerey/$IMAGE_NAME:$TAG
docker build -t $REPO -f ./Dockerfile $DOCKERFILE_DIR
......
......@@ -40,7 +40,7 @@ type dataset_res = {
}
let merge_results ~res_by_tools : text_file workflow =
let env = docker_image ~account:"carinerey" ~name:"ete3" ~tag:"3.0.0b35" () in
let env = docker_image ~account:"carinerey" ~name:"python_basics" ~tag:"07172018" () in
let command = List.map res_by_tools ~f:(fun res ->
let w = match res with
| `Pcoc d -> Pcoc.results d
......@@ -79,7 +79,6 @@ let merge_results ~res_by_tools : text_file workflow =
let plot_merge_results ~plot_all_sites ~(res_by_tools:result list) ~tree ~faa ~tsv : svg workflow =
(*let env = docker_image ~account:"carinerey" ~name:"ete3" ~tag:"3.0.0b35" () in*)
let env = docker_image ~account:"carinerey" ~name:"pcoc" ~tag:"06212018" () in
(* use of pcoc env due to its working X server for dra plot with ete3 *)
let meths = List.map res_by_tools ~f:(fun res ->
......
......@@ -3,7 +3,7 @@ open Bistro.EDSL
open Bistro.Std
open File_formats
let env = docker_image ~account:"carinerey" ~name:"ete3:3.0.0b35" ()
let env = docker_image ~account:"carinerey" ~name:"python_basics" ~tag:"07172018" ()
let prepare tree =
workflow ~descr:"utils.parse_input_tree" [
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment