Skip to content
GitLab
Projects
Groups
Snippets
Help
Loading...
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in / Register
Toggle navigation
Open sidebar
VEBER Philippe
codepi
Commits
525b1d4f
Commit
525b1d4f
authored
Jul 25, 2018
by
Carine Rey
Browse files
add matplotlib and docopt in python docker
parent
0067c5c2
Changes
4
Hide whitespace changes
Inline
Side-by-side
Showing
4 changed files
with
8 additions
and
4 deletions
+8
-4
etc/docker/python_basics/Dockerfile
etc/docker/python_basics/Dockerfile
+5
-1
etc/docker/python_basics/build_docker.sh
etc/docker/python_basics/build_docker.sh
+1
-1
lib/multinomial.ml
lib/multinomial.ml
+1
-1
lib/tree_dataset.ml
lib/tree_dataset.ml
+1
-1
No files found.
etc/docker/python_basics/Dockerfile
View file @
525b1d4f
...
...
@@ -24,4 +24,8 @@ RUN pip install --upgrade pip
RUN
pip
install
ete3
==
3.0.0b35
RUN
pip
install
scipy
==
1.1.0
RUN
pip
install
biopython
==
1.72
RUN
pip
install
docopt
RUN
pip
install
matplotlib
RUN
apt-get update
&&
\
apt-get
install
--no-install-recommends
-qy
\
python-tk
etc/docker/python_basics/build_docker.sh
View file @
525b1d4f
...
...
@@ -4,7 +4,7 @@ set -e
IMAGE_NAME
=
python_basics
DOCKERFILE_DIR
=
.
TAG
=
07
18
2018
TAG
=
07
25
2018
REPO
=
carinerey/
$IMAGE_NAME
:
$TAG
docker build
-t
$REPO
-f
./Dockerfile
$DOCKERFILE_DIR
...
...
lib/multinomial.ml
View file @
525b1d4f
...
...
@@ -5,7 +5,7 @@ open Bistro_bioinfo.Std
open
File_formats
let
multinomial
~
(
tree_id
:_
workflow
)
~
(
tree_sc
:_
workflow
)
~
(
faa
:
aminoacid_fasta
workflow
)
:
[
`multinomial
]
directory
workflow
=
let
env
=
docker_image
~
account
:
"carinerey"
~
name
:
"python_basics"
~
tag
:
"07
18
2018"
()
in
let
env
=
docker_image
~
account
:
"carinerey"
~
name
:
"python_basics"
~
tag
:
"07
25
2018"
()
in
workflow
~
descr
:
(
"calc_multinomial"
)
[
mkdir_p
dest
;
cmd
"python"
~
env
[
...
...
lib/tree_dataset.ml
View file @
525b1d4f
...
...
@@ -3,7 +3,7 @@ open Bistro.EDSL
open
Bistro
.
Std
open
File_formats
let
env
=
docker_image
~
account
:
"carinerey"
~
name
:
"python_basics"
~
tag
:
"07
18
2018"
()
let
env
=
docker_image
~
account
:
"carinerey"
~
name
:
"python_basics"
~
tag
:
"07
25
2018"
()
let
prepare
tree
=
workflow
~
descr
:
"utils.parse_input_tree"
[
...
...
Write
Preview
Markdown
is supported
0%
Try again
or
attach a new file
.
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment