Commit 566892d0 authored by Carine Rey's avatar Carine Rey
Browse files

add some TODOs

parent 3889e9ef
open Core
open Bistro.EDSL
open Bistro.Std
open Core
open File_formats
open Bistro_bioinfo.Std
......@@ -11,7 +11,7 @@ type det_out =
| Pcoc_out
| Diffsel_out
let pcoc ?plot_complete ?gamma ~(faa:aminoacid_fasta workflow) ~(tree:_ workflow) : (*`pcoc*) det_out directory workflow =
let pcoc ?plot_complete ?gamma ~(faa:aminoacid_fasta workflow) ~(tree:_ workflow) : (*`pcoc TODO*) det_out directory workflow =
let env = docker_image ~account:"carinerey" ~name:"pcoc" ~tag:"06212018" () in
workflow ~descr:"convergence_detection.pcoc" [
cmd "pcoc_det.py" ~env [
......@@ -22,10 +22,10 @@ let pcoc ?plot_complete ?gamma ~(faa:aminoacid_fasta workflow) ~(tree:_ workflo
option ( flag string "--gamma" ) gamma;
option ( flag string "--plot --plot_complete_ali" ) plot_complete;
]
]
] (* TODO / selector ["RUN*/*.results.tsv"] *)
let diffsel ~(phy_n:nucleotide_phylip workflow) ~(tree: _ workflow) ~(w_every:int) ~(n_cycles: int) : (*`diffsel*) det_out directory workflow =
let diffsel ~(phy_n:nucleotide_phylip workflow) ~(tree: _ workflow) ~(w_every:int) ~(n_cycles: int) : (*`diffsel TODO*) det_out directory workflow =
let env = docker_image ~account:"vlanore" ~name:"diffsel" ~tag:"v1.0" () in
(*_build/diffsel -t data/samhd1.tree -d data/samhd1.ali -ncond 3 -x 1 10000 myrun*)
workflow ~descr:"convergence_detection.diffsel" [
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment