rm pair distance filter

lib/pipeline.ml

@@ -422,7 +422,7 @@ let validation_main ~outdir ?(indir = "") ?(ns = 0) ?(np = 2) ?(mem = 2) ~previe
   (* simulated trees *)
   Random.init seed ;
   let nb_sites = if ns = 0 then (if preview then 20 else 50) else ns in
-  let profile = Profile.profile_l_of_splitted_profile ~nb_cat:Unif_3 ~nb_sites profile_fn ~seed:(Random.int Int.max_value) in
+  let profile = Profile.profile_l_of_splitted_profile ~nb_cat:All ~nb_sites profile_fn ~seed:(Random.int Int.max_value) in
   let sim_repo_l = derive_profile ~indir ~ns ~preview ~fast_mode ~no_Ne ~ne_test ~no_HaPC ~tree_dir ~profile ~use_concat ~add_indels ~only_simu ~seed () in
   (* real trees *)
   let indir_dataset_l = if indir = "" then [] else parse_input_data ~seed indir in