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VEBER Philippe
codepi
Commits
5c6f471b
Commit
5c6f471b
authored
Sep 07, 2018
by
Carine Rey
Browse files
rm pair distance filter
parent
b8f7e2e2
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lib/pipeline.ml
lib/pipeline.ml
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lib/pipeline.ml
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5c6f471b
...
...
@@ -422,7 +422,7 @@ let validation_main ~outdir ?(indir = "") ?(ns = 0) ?(np = 2) ?(mem = 2) ~previe
(* simulated trees *)
Random
.
init
seed
;
let
nb_sites
=
if
ns
=
0
then
(
if
preview
then
20
else
50
)
else
ns
in
let
profile
=
Profile
.
profile_l_of_splitted_profile
~
nb_cat
:
Unif_3
~
nb_sites
profile_fn
~
seed
:
(
Random
.
int
Int
.
max_value
)
in
let
profile
=
Profile
.
profile_l_of_splitted_profile
~
nb_cat
:
All
~
nb_sites
profile_fn
~
seed
:
(
Random
.
int
Int
.
max_value
)
in
let
sim_repo_l
=
derive_profile
~
indir
~
ns
~
preview
~
fast_mode
~
no_Ne
~
ne_test
~
no_HaPC
~
tree_dir
~
profile
~
use_concat
~
add_indels
~
only_simu
~
seed
()
in
(* real trees *)
let
indir_dataset_l
=
if
indir
=
""
then
[]
else
parse_input_data
~
seed
indir
in
...
...
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