Update makefile for analysis

Makefile

@@ -73,16 +73,16 @@ real:
 #   experiments on threshold choices
 # -----------------------------------------------------------------------
 
-.PHONY: analyses_30Bloom_t
-analyses_30Bloom_t:
+.PHONY: analyses_seuils
+analyses_seuils:
 	cd example && \
-	reviewphiltrans validation --outdir outdir_analyses_tiragesBloomK30_t --tree-dir trees4analyses --profile-fn aa_fitness/tiragesBloomK30.tsv --np 4 --no-ne --no-hapc --ns 500 && \
-	mv dag.dot daganalyses_tiragesBloomK30_t.dot
+	reviewphiltrans validation --outdir outdir_analyses_seuils --tree-dir trees4analyses --profile-fn aa_fitness/263SelectedProfiles.tsv --np 16 --no-ne --no-hapc --ns 1000 && \
+	mv dag.dot daganalyses_seuils.dot
 
-.PHONY: analyses_263Bloom_t
-analyses_263Bloom_t:
+.PHONY: analyses_everything
+analyses_everything:
 	cd example && \
-	reviewphiltrans validation --outdir outdir_analyses_263SelectedProfiles_t --tree-dir trees4analyses --profile-fn aa_fitness/263SelectedProfiles.tsv --np 4 --no-ne --no-hapc --ns 500 && \
+	reviewphiltrans validation --outdir outdir_analyses_everything --tree-dir trees4analyses --profile-fn aa_fitness/263SelectedProfiles.tsv --np 16 --ns 100 && \
 	mv dag.dot daganalyses_263SelectedProfiles_t.dot
 
 # -----------------------------------------------------------------------