Docker-in-Docker (DinD) capabilities of public runners deactivated. More info

Commit 8249be36 authored by LANORE Vincent's avatar LANORE Vincent
Browse files

Update makefile for analysis

parent 5d9273ff
......@@ -73,16 +73,16 @@ real:
# experiments on threshold choices
# -----------------------------------------------------------------------
.PHONY: analyses_30Bloom_t
analyses_30Bloom_t:
.PHONY: analyses_seuils
analyses_seuils:
cd example && \
reviewphiltrans validation --outdir outdir_analyses_tiragesBloomK30_t --tree-dir trees4analyses --profile-fn aa_fitness/tiragesBloomK30.tsv --np 4 --no-ne --no-hapc --ns 500 && \
mv dag.dot daganalyses_tiragesBloomK30_t.dot
reviewphiltrans validation --outdir outdir_analyses_seuils --tree-dir trees4analyses --profile-fn aa_fitness/263SelectedProfiles.tsv --np 16 --no-ne --no-hapc --ns 1000 && \
mv dag.dot daganalyses_seuils.dot
.PHONY: analyses_263Bloom_t
analyses_263Bloom_t:
.PHONY: analyses_everything
analyses_everything:
cd example && \
reviewphiltrans validation --outdir outdir_analyses_263SelectedProfiles_t --tree-dir trees4analyses --profile-fn aa_fitness/263SelectedProfiles.tsv --np 4 --no-ne --no-hapc --ns 500 && \
reviewphiltrans validation --outdir outdir_analyses_everything --tree-dir trees4analyses --profile-fn aa_fitness/263SelectedProfiles.tsv --np 16 --ns 100 && \
mv dag.dot daganalyses_263SelectedProfiles_t.dot
# -----------------------------------------------------------------------
......
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