Commit 85cc0e23 authored by LANORE Vincent's avatar LANORE Vincent
Browse files

Updated makefile for tonight's runs.

parent d0d2d6e3
......@@ -69,17 +69,12 @@ real:
dot -Tpdf dagtest_real.dot -o dagtest_real.pdf
# -----------------------------------------------------------------------
# experiments on threshold choices
# big experiments
# -----------------------------------------------------------------------
.PHONY: analyses_we
analyses_we:
cd example && \
reviewphiltrans validation --outdir outdir_analyses_we_0914 --tree-dir trees_analyses_weekend --profile-fn aa_fitness/263SelectedProfiles.tsv --np 24 --ns 2000 --seed 2167988076475850536 --fast ; \
reviewphiltrans validation --outdir outdir_analyses_we_0914 --tree-dir trees_analyses_weekend --profile-fn aa_fitness/263SelectedProfiles.tsv --np 24 --ns 2000 --seed 2167988076475850536 ; \
cp trees4analyses_db/orthomam_* trees_analyses_weekend/ ; \
reviewphiltrans validation --outdir outdir_analyses_we_0914 --tree-dir trees_analyses_weekend --profile-fn aa_fitness/263SelectedProfiles.tsv --np 24 --ns 2000 --seed 2167988076475850536 --fast ; \
reviewphiltrans validation --outdir outdir_analyses_we_0914 --tree-dir trees_analyses_weekend --profile-fn aa_fitness/263SelectedProfiles.tsv --np 24 --ns 2000 --seed 2167988076475850536 ; \
mv dag.dot daganalyses_we.dot
reviewphiltrans validation --outdir outdir_analyses_we_0914 --tree-dir trees_analyses_weekend --profile-fn aa_fitness/263SelectedProfiles.tsv --np 24 --ns 2000 --seed 2167988076475850536
# -----------------------------------------------------------------------
# Cleaning and formatting
......
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