📣 An issue occured with the embedded container registry on October 25 2021, between 10:30 and 12:10 (UTC+2). Any persisting issues should be reported to CC-IN2P3 Support. 🐛

Commit 9dc0b844 authored by Philippe Veber's avatar Philippe Veber
Browse files

renamed Tamuri into Tdg09

parent 9d0a474a
......@@ -50,7 +50,7 @@ let merge_results ?fna_infos ~(res_by_tools : result list) () : cpt file =
| `Identical_WAG d -> Identical.results d
| `Topological_LG d -> Topological.results d
| `Topological_WAG d -> Topological.results d
| `Tdg09 d -> Tamuri.results d
| `Tdg09 d -> Tdg09.results d
| `Multinomial d -> d
| `Msd (d, _) -> Msd.results d
in
......
......@@ -144,10 +144,10 @@ module Make (Q : Query) = struct
~faa:(amino_acid_alignment d)
let tdg09 d =
Tamuri.tdg09
Tdg09.tdg09
~tree:(tree_with_no_single_child ~branch_length_unit:`Amino_acid d)
~faa:(amino_acid_alignment d) ()
|> Tamuri.results
|> Tdg09.results
let mock_tdg09 d =
let f = fun%workflow dest ->
......@@ -165,7 +165,7 @@ module Make (Q : Query) = struct
let failsafe_tdg09 d = Workflow.trywith (tdg09 d) (mock_tdg09 d)
let inhouse_tdg09 d =
Tamuri.inhouse_tdg09
Tdg09.inhouse_tdg09
(tree ~branch_length_unit:`Amino_acid d)
(amino_acid_alignment d)
......
......@@ -123,7 +123,7 @@ let repo_of_detection_result res =
| `Identical_WAG w -> item ["Identical_WAG.results.tsv"] (Identical.results w)
| `Topological_LG w -> item ["Topological_LG.results.tsv"] (Topological.results w)
| `Topological_WAG w -> item ["Topological_WAG.results.tsv"] (Topological.results w)
| `Tdg09 w -> item ["Tdg09.results.tsv"] (Tamuri.results w)
| `Tdg09 w -> item ["Tdg09.results.tsv"] (Tdg09.results w)
| `Multinomial w -> item ["Multinomial.results.tsv"] w
| `Msd (w, e) -> item [sprintf "Msd.%f.results.tsv" e] (Msd.results w)
] ;
......@@ -212,7 +212,7 @@ let derive_from_det_meth ~det_meth ~(dataset : Dataset.t) ~preview =
| `Pcoc -> `Pcoc (Pcoc.pcoc ~descr ~catx_est:10 ~max_gap_per_conv_leaf:25 ~max_gap_per_pos:25 ~plot_complete:false ~gamma:false ~faa ~tree:tree_sc ())
| `Pcoc_gamma -> `Pcoc_gamma (Pcoc.pcoc ~descr ~catx_est:10 ~max_gap_per_conv_leaf:25 ~max_gap_per_pos:25 ~plot_complete: false ~gamma:true ~faa ~tree:tree_sc ())
| `Pcoc_C60 -> `Pcoc_C60 (Pcoc.pcoc ~descr ~catx_est:60 ~plot_complete: false ~gamma:false ~faa ~tree:tree_sc ())
| `Tdg09 -> `Tdg09 (Tamuri.tdg09 ~descr ~faa ~tree:tree_sc ())
| `Tdg09 -> `Tdg09 (Tdg09.tdg09 ~descr ~faa ~tree:tree_sc ())
| `Diffsel -> `Diffsel (Diffsel.diffsel ~descr ~phy_n ~tree:diffsel_tree ~w_every ~n_cycles ~seed ())
| `Identical_LG -> `Identical_LG (Identical.identical ~descr ~faa ~tree_id ~tree_sc ~prot_model:"LG08" ())
| `Identical_WAG -> `Identical_WAG (Identical.identical ~descr ~faa ~tree_id ~tree_sc ~prot_model:"WAG01" ())
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment