Commit 9e609b48 authored by LANORE Vincent's avatar LANORE Vincent
Browse files

tdg09 command is now directly java (instead of a bash script) which should...

tdg09 command is now directly java (instead of a bash script) which should help with sleeping java processes
parent 85bf62c0
......@@ -34,7 +34,7 @@ let tdg09 ~(faa:aminoacid_fasta workflow) ~(tree:_ workflow) : [`tdg09] directo
cmd "python" ~stdout:tdg09_out [
string "try_again.py";
opt "--timeout" int 60;
string "\"tdg09.sh";
string "\"java -cp /tdg09/tdg09-1.1.2/dist/tdg09.jar tdg09.Analyse";
opt "-tree" ident tmp_tree;
opt "-alignment" ident tmp_ali_phy ;
opt "-threads" int 1 ;
......
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