Commit a4fc5571 authored by Carine Rey's avatar Carine Rey
Browse files

update bbpsuite docker version (update bpp-phyl)

parent e233b013
......@@ -38,7 +38,7 @@ RUN git clone https://github.com/BioPP/bpp-popgen . &&\
WORKDIR $bpp_dir/sources/bpp-phyl
RUN git clone --branch devel https://github.com/BioPP/bpp-phyl . &&\
git checkout ac83366 &&\
git checkout 722591f &&\
cmake . && \
(make -j 4 || make) && \
make install
......
......@@ -4,7 +4,7 @@ set -e
IMAGE_NAME=bppsuite
DOCKERFILE_DIR=.
TAG=07052018
TAG=07192018
REPO=carinerey/$IMAGE_NAME:$TAG
docker build -t $REPO -f ./Dockerfile $DOCKERFILE_DIR
......
......@@ -6,7 +6,7 @@ open File_formats
type bppseqgen_multi_profiles
let env = docker_image ~account:"carinerey" ~name:"bppsuite" ~tag:"07052018" ()
let env = docker_image ~account:"carinerey" ~name:"bppsuite" ~tag:"07192018" ()
let assign k v =
seq ~sep:"=" [ string k ; v ]
......@@ -73,6 +73,7 @@ let bppseqgen_multi_profiles_script ~config ~nb_combis ~out ~profile_f =
end_i=$NB_COMBI_PROFILES
NB_COLS=`head -n 1 $PROFILE_F | awk '{print NF}'`
rm -f $FINAL_OUT.info
for ((i=start_i; i<=end_i; i++))
do
......
......@@ -33,7 +33,7 @@ let conf_file_bppml ~tree ~faa ~out ~config =
)
let bppml ?(descr="") ~faa ~tree ~config : _ workflow =
let env = docker_image ~account:"carinerey" ~name:"bppsuite" ~tag:"07052018" () in
let env = docker_image ~account:"carinerey" ~name:"bppsuite" ~tag:"07192018" () in
let config_f = dest // "config_bppml.bpp" in
let out = ident dest in
workflow ~descr:("bppsuite.bppml" ^ descr) [
......@@ -73,7 +73,7 @@ let conf_file_bppancestor ~tree ~faa ~out ~config =
)
let bppancestor ?(descr="") ~faa ~tree ~config : _ workflow =
let env = docker_image ~account:"carinerey" ~name:"bppsuite" ~tag:"07052018" () in
let env = docker_image ~account:"carinerey" ~name:"bppsuite" ~tag:"07192018" () in
let config_f = dest // "config_bppancestor.bpp" in
let out = ident dest in
workflow ~descr:("bppsuite.bppancestor" ^ descr) [
......
......@@ -33,7 +33,7 @@ let conf_file_bppml ~tree ~faa ~out ~config =
)
let bppml ?(descr="") ~faa ~tree ~config : _ workflow =
let env = docker_image ~account:"carinerey" ~name:"bppsuite" ~tag:"07052018" () in
let env = docker_image ~account:"carinerey" ~name:"bppsuite" ~tag:"07192018" () in
let config_f = dest // "config_bppml.bpp" in
let out = ident dest in
workflow ~descr:("bppsuite.bppml" ^ descr) [
......
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