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Docker-in-Docker (DinD) capabilities of public runners deactivated. More info

Commit a6bd3bfe authored by Carine Rey's avatar Carine Rey
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add analyses_test

parent 2974f5ed
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Makefile
View file @ a6bd3bfe
......@@ -30,12 +30,20 @@ push_docker:
test:
cd example && \
reviewphiltrans pipeline --outdir outdir --tree-dir trees --profile-fn aa_fitness/aafitness1_first_100_freq_ok_bpp.csv --preview --np 4 && \
dot -Tsvg dag.dot -o dag.svg
mv dag.dot dagtest.dot && \
dot -Tsvg dagtest.dot -o dagtest.svg && \
analyses_test:
cd example && \
reviewphiltrans pipeline --outdir outdir_analyses --tree-dir trees4analyses --profile-fn aa_fitness/aafitness1_first_100_freq_ok_bpp.csv --preview --np 4 && \
mv dag.dot daganalyses_test.dot && \
dot -Tpdf daganalyses_test.dot -o daganalyses_test.pdf
analyses:
cd example && \
reviewphiltrans pipeline --outdir outdir_analyses --tree-dir trees4analyses --profile-fn aa_fitness/aafitness1_first_100_freq_ok_bpp.csv --np 4 && \
dot -Tpdf dag.dot -o dag.pdf
mv dag.dot daganalyses.dot && \
dot -Tpdf daganalyses.dot -o daganalyses.pdf
clean_test:
rm -r example/_bistro || exit 0
......
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