Commit ada58876 authored by Carine Rey's avatar Carine Rey
Browse files

clean makefile

parent e1133f22
......@@ -45,27 +45,21 @@ test_val:
mv dag.dot dagtest_val.dot && \
dot -Tsvg dagtest_val.dot -o dagtest_val.svg
test_real:
real:
cd example && \
reviewphiltrans pipeline --outdir outdir_real_data --indir real_data --tree-dir trees --profile-fn aa_fitness/tiragesBloomK30.tsv --preview --np 4
reviewphiltrans detection --outdir outdir_real_data --indir real_data --preview --np 4
mv dag.dot dagtest_real.dot && \
dot -Tpdf dagtest_real.dot -o dagtest_real.pdf
real:
cd example && \
reviewphiltrans pipeline --outdir outdir_real_data --indir real_data --tree-dir trees --profile-fn aa_fitness/tiragesBloomK30.tsv --np 4
analyses_test:
analyses_30Bloom:
cd example && \
reviewphiltrans pipeline --outdir outdir_analyses_test --tree-dir trees4analyses --profile-fn aa_fitness/tiragesBloomK30.tsv --preview --np 4 && \
mv dag.dot daganalyses_test.dot && \
dot -Tpdf daganalyses_test.dot -o daganalyses_test.pdf
reviewphiltrans validation --outdir outdir_analyses_tiragesBloomK30 --tree-dir trees4analyses --profile-fn aa_fitness/tiragesBloomK30.tsv --np 4 && \
mv dag.dot daganalyses_tiragesBloomK30.dot
analyses:
analyses_263Bloom:
cd example && \
reviewphiltrans pipeline --outdir outdir_analyses --tree-dir trees4analyses --profile-fn aa_fitness/tiragesBloomK30.tsv --np 4 && \
mv dag.dot daganalyses.dot && \
dot -Tpdf daganalyses.dot -o daganalyses.pdf
reviewphiltrans validation --outdir outdir_analyses_263SelectedProfiles --tree-dir trees4analyses --profile-fn aa_fitness/263SelectedProfiles.tsv --np 4 && \
mv dag.dot daganalyses_263SelectedProfiles.dot
clean_test:
rm -r example/_bistro || exit 0
......
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