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VEBER Philippe
codepi
Commits
ada8011e
Commit
ada8011e
authored
Jul 12, 2018
by
Carine Rey
Browse files
add option plot_all_sites in plot_merge_results
parent
2ecd2cb7
Changes
3
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3 changed files
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3 additions
and
3 deletions
+3
-3
lib/convergence_detection.ml
lib/convergence_detection.ml
+1
-2
lib/convergence_detection.mli
lib/convergence_detection.mli
+1
-0
lib/pipeline.ml
lib/pipeline.ml
+1
-1
No files found.
lib/convergence_detection.ml
View file @
ada8011e
...
...
@@ -73,8 +73,7 @@ let merge_results ~res_by_tools : text_file workflow =
]
let
plot_merge_results
~
(
res_by_tools
:
result
list
)
~
tree
~
faa
~
tsv
:
svg
workflow
=
let
plot_all_sites
=
true
in
let
plot_merge_results
~
plot_all_sites
~
(
res_by_tools
:
result
list
)
~
tree
~
faa
~
tsv
:
svg
workflow
=
(*let env = docker_image ~account:"carinerey" ~name:"ete3" ~tag:"3.0.0b35" () in*)
let
env
=
docker_image
~
account
:
"carinerey"
~
name
:
"pcoc"
~
tag
:
"06212018"
()
in
(* use of pcoc env due to its working X server for dra plot with ete3 *)
...
...
lib/convergence_detection.mli
View file @
ada8011e
...
...
@@ -33,6 +33,7 @@ val merge_results :
text_file
workflow
val
plot_merge_results
:
plot_all_sites
:
bool
->
res_by_tools
:
result
list
->
tree
:
nhx
workflow
->
faa
:
aminoacid_fasta
workflow
->
...
...
lib/pipeline.ml
View file @
ada8011e
...
...
@@ -184,7 +184,7 @@ let derive_from_dataset ~dataset ~preview =
let
tsv
=
merged_results
in
let
faa
=
dataset
.
dataset
.
faa
in
let
tree
=
Tree_dataset
.
tree
dataset
.
dataset
.
tree_dataset
`Detection
in
let
plot_merged_results
=
plot_merge_results
~
res_by_tools
~
tsv
~
faa
~
tree
in
let
plot_merged_results
=
plot_merge_results
~
plot_all_sites
:
true
~
res_by_tools
~
tsv
~
faa
~
tree
in
let
model_prefix
=
dataset
.
model_prefix
in
let
tree_prefix
=
dataset
.
tree_prefix
in
{
model_prefix
;
tree_prefix
;
res_by_tools
;
merged_results
;
plot_merged_results
}
...
...
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