Docker-in-Docker (DinD) capabilities of public runners deactivated. More info

Commit ada8011e authored by Carine Rey's avatar Carine Rey
Browse files

add option plot_all_sites in plot_merge_results

parent 2ecd2cb7
......@@ -73,8 +73,7 @@ let merge_results ~res_by_tools : text_file workflow =
]
let plot_merge_results ~(res_by_tools:result list) ~tree ~faa ~tsv : svg workflow =
let plot_all_sites = true in
let plot_merge_results ~plot_all_sites ~(res_by_tools:result list) ~tree ~faa ~tsv : svg workflow =
(*let env = docker_image ~account:"carinerey" ~name:"ete3" ~tag:"3.0.0b35" () in*)
let env = docker_image ~account:"carinerey" ~name:"pcoc" ~tag:"06212018" () in
(* use of pcoc env due to its working X server for dra plot with ete3 *)
......
......@@ -33,6 +33,7 @@ val merge_results :
text_file workflow
val plot_merge_results :
plot_all_sites: bool ->
res_by_tools : result list ->
tree:nhx workflow ->
faa:aminoacid_fasta workflow ->
......
......@@ -184,7 +184,7 @@ let derive_from_dataset ~dataset ~preview =
let tsv = merged_results in
let faa = dataset.dataset.faa in
let tree = Tree_dataset.tree dataset.dataset.tree_dataset `Detection in
let plot_merged_results = plot_merge_results ~res_by_tools ~tsv ~faa ~tree in
let plot_merged_results = plot_merge_results ~plot_all_sites:true ~res_by_tools ~tsv ~faa ~tree in
let model_prefix = dataset.model_prefix in
let tree_prefix = dataset.tree_prefix in
{model_prefix; tree_prefix; res_by_tools ; merged_results ; plot_merged_results}
......
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