Commit aed9c6ab authored by Carine Rey's avatar Carine Rey
Browse files

update totake into account indels

parent 6fab92e8
......@@ -55,6 +55,9 @@ let conf_file_bppancestor ~tree ~faa ~out ~config =
assign "OUT" (out) ;
assign "input.sequence.file" (dep faa) ;
assign "alphabet" (string "Protein") ;
assign "input.sequence.remove_stop_codons" (string "no") ;
assign "input.sequence.sites_to_use" (string "all") ;
assign "input.sequence.remove_saturated_sites" (string "yes") ;
assign "input.tree.file" (dep tree) ;
assign "init.tree" (string "user") ;
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