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VEBER Philippe
codepi
Commits
b02a1cd1
Commit
b02a1cd1
authored
Aug 09, 2018
by
Carine Rey
Browse files
rm ns * 10 pour H0 (imcompatible avec 3 categories dans l'etat) (correctif)
parent
12a98cd8
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1
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lib/bppsuite.ml
lib/bppsuite.ml
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lib/bppsuite.ml
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b02a1cd1
...
...
@@ -93,6 +93,7 @@ let bppseqgen_multi_profiles ?(descr="") ~profile_f ~profile_c ~nb_sites ~tree ~
let
nb_combis
=
Pervasives
.(
nb_sites
/
nb_sites_per_profile
)
in
let
config_f
=
dest
//
"config.bpp"
in
let
profile_c_ok
=
tmp
//
"profiles_c.tsv"
in
let
profile_c_ok
=
dep
profile_c
in
let
out
=
dest
//
"seq.fa"
in
workflow
~
descr
:
(
"bppsuite.bppseqgen"
^
descr
)
[
docker
env
(
...
...
@@ -100,10 +101,10 @@ let bppseqgen_multi_profiles ?(descr="") ~profile_f ~profile_c ~nb_sites ~tree ~
mkdir_p
dest
;
mkdir_p
tmp
;
cd
tmp
;
cmd
"head"
~
stdout
:
profile_c_ok
[
(*
cmd "head" ~stdout:profile_c_ok [
opt "-n" int nb_sites;
dep profile_c
];
];
*)
cmd
"cat"
~
stdout
:
config_f
[(
file_dump
(
conf_file_bppseqgen_multi_profiles
~
tree
~
profile_f
~
config
~
ne_c
~
ne_a
~
nb_sites_per_profile
))];
cmd
"bash"
[(
file_dump
(
bppseqgen_multi_profiles_script
~
config
:
config_f
~
out
~
profile_c
:
profile_c_ok
))];
]
...
...
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