Commit b02a1cd1 authored by Carine Rey's avatar Carine Rey
Browse files

rm ns * 10 pour H0 (imcompatible avec 3 categories dans l'etat) (correctif)

parent 12a98cd8
......@@ -93,6 +93,7 @@ let bppseqgen_multi_profiles ?(descr="") ~profile_f ~profile_c ~nb_sites ~tree ~
let nb_combis = Pervasives.(nb_sites / nb_sites_per_profile) in
let config_f = dest // "config.bpp" in
let profile_c_ok = tmp // "profiles_c.tsv" in
let profile_c_ok = dep profile_c in
let out = dest // "seq.fa" in
workflow ~descr:("bppsuite.bppseqgen" ^ descr) [
docker env (
......@@ -100,10 +101,10 @@ let bppseqgen_multi_profiles ?(descr="") ~profile_f ~profile_c ~nb_sites ~tree ~
mkdir_p dest;
mkdir_p tmp;
cd tmp;
cmd "head" ~stdout:profile_c_ok [
(*cmd "head" ~stdout:profile_c_ok [
opt "-n" int nb_sites;
dep profile_c
];
];*)
cmd "cat" ~stdout:config_f [(file_dump (conf_file_bppseqgen_multi_profiles ~tree ~profile_f ~config ~ne_c ~ne_a ~nb_sites_per_profile))];
cmd "bash" [(file_dump (bppseqgen_multi_profiles_script ~config:config_f ~out ~profile_c:profile_c_ok))];
]
......
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