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Commit b2337639 authored by Carine Rey's avatar Carine Rey
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Makefile: update tests

parent 91b4df22
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Makefile
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......@@ -35,9 +35,9 @@ push_docker:
test:
cd example && \
reviewphiltrans validation --outdir outdir_test --tree-dir trees_test --profile-fn aa_fitness/263SelectedProfiles.tsv --ns 5 --np 4 --seed 4256073781403810077 && \
reviewphiltrans validation --outdir outdir_test --tree-dir trees_test --profile-fn aa_fitness/263SelectedProfiles.tsv --dnds --ns 5 --np 4 --seed 4256073781403810077 && \
mv dag.dot dagtest_val.dot && \
dot -Tsvg dagtest_val.dot -o dagtest_val.svg
reviewphiltrans validation --outdir outdir_test --tree-dir trees_test --profile-fn aa_fitness/263SelectedProfiles.tsv --dnds --ns 5 --np 4 --seed 4256073781403810077
#mv dag.dot dagtest_val.dot && \
#dot -Tsvg dagtest_val.dot -o dagtest_val.svg
# -----------------------------------------------------------------------
# Test
......@@ -46,8 +46,8 @@ test:
.PHONY: realdata_test
realdata_test:
cd example && \
reviewphiltrans realdata --outdir outdir_realdata_test --indir real_data --np 4 --seed 4256073781403810077 &&\
reviewphiltrans realdata --dnds --outdir outdir_realdata_test --indir real_data --np 4 --seed 4256073781403810077
reviewphiltrans realdata --outdir outdir_realdata_test --indir real_data/online_rodent --np 4 &&\
reviewphiltrans realdata --pcoc --outdir outdir_realdata_test --indir real_data/online_rodent --np 4
# -----------------------------------------------------------------------
# Realdata
......
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