Commit c74ebba1 authored by Louis Duchemin's avatar Louis Duchemin
Browse files

RERconverge : fix bistro templates in main script

parent bd526da0
......@@ -5,6 +5,7 @@ suppressPackageStartupMessages({
master_tree <- read.tree(file="<<<dep master_tree>>>")
gene_trees <- readTrees("<<<dep gene_tree_set>>>", max.read=<<<max_read>>>, masterTree=master_tree, minSpecs=<<<min_specs>>>)
is_continuous = <<<template_bool continuous>>>
relative_rates <- getAllResiduals(
gene_trees,
......@@ -49,10 +50,10 @@ build_traits_paths <-
traits_paths <- build_traits_paths(
phenotypes,
gene_trees,
<<<template_bool continuous>>>
is_continuous
)
res <- if (<<<template_bool continuous>>>) {
res <- if (is_continuous) {
correlateWithContinuousPhenotype(
relative_rates,
traits_paths,
......
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