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Docker-in-Docker (DinD) capabilities of public runners deactivated.
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VEBER Philippe
codepi
Commits
d4a259a7
Commit
d4a259a7
authored
Nov 17, 2020
by
Philippe Veber
Browse files
File_formats: removed redundant nw
parent
ba9835df
Changes
6
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6 changed files
with
6 additions
and
11 deletions
+6
-11
lib/detection_pipeline.ml
lib/detection_pipeline.ml
+1
-1
lib/detection_pipeline.mli
lib/detection_pipeline.mli
+1
-1
lib/file_formats.ml
lib/file_formats.ml
+0
-5
lib/phyml.ml
lib/phyml.ml
+1
-1
lib/post_analyses.ml
lib/post_analyses.ml
+2
-2
lib/tree_dataset.mli
lib/tree_dataset.mli
+1
-1
No files found.
lib/detection_pipeline.ml
View file @
d4a259a7
...
...
@@ -19,7 +19,7 @@ module type S = sig
val
amino_acid_alignment
:
query
->
aminoacid_fasta
file
val
gene_tree
:
query
->
n
w
file
val
gene_tree
:
query
->
n
ewick
file
val
dn_tree
:
query
->
text
file
...
...
lib/detection_pipeline.mli
View file @
d4a259a7
...
...
@@ -19,7 +19,7 @@ module type S = sig
val
amino_acid_alignment
:
query
->
aminoacid_fasta
file
val
gene_tree
:
query
->
n
w
file
val
gene_tree
:
query
->
n
ewick
file
val
dn_tree
:
query
->
text
file
...
...
lib/file_formats.ml
View file @
d4a259a7
...
...
@@ -20,11 +20,6 @@ class type phylip = object
method
format
:
[
`phylip
]
end
class
type
nw
=
object
inherit
text
method
format
:
[
`nw
]
end
class
type
diffsel_tree
=
object
inherit
text
method
format
:
[
`diffsel_tree
]
...
...
lib/phyml.ml
View file @
d4a259a7
...
...
@@ -36,5 +36,5 @@ let phyml ~model ~tree phy : [`phyml] directory =
]
]
let
phyml_tree
~
model
~
tree
phy
:
n
w
file
=
let
phyml_tree
~
model
~
tree
phy
:
n
ewick
file
=
Workflow
.
select
(
phyml
~
model
~
tree
phy
)
[
"tree.phy_phyml_tree.txt"
]
lib/post_analyses.ml
View file @
d4a259a7
...
...
@@ -43,8 +43,8 @@ type dn_ds_tsv = {
}
type
reinfered_trees
=
{
reinfered_tree_nt
:
n
w
file
;
reinfered_tree_aa
:
n
w
file
;
reinfered_tree_nt
:
n
ewick
file
;
reinfered_tree_aa
:
n
ewick
file
;
input_tree
:
nhx
file
;
tree_prefix
:
string
;
model_prefix
:
string
;
...
...
lib/tree_dataset.mli
View file @
d4a259a7
...
...
@@ -32,5 +32,5 @@ val raxmlng_fna :
?
model
:
string
->
fna
:
nucleotide_fasta
file
->
unit
->
n
w
file
n
ewick
file
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