Commit d4a259a7 authored by Philippe Veber's avatar Philippe Veber
Browse files

File_formats: removed redundant nw

parent ba9835df
......@@ -19,7 +19,7 @@ module type S = sig
val amino_acid_alignment : query -> aminoacid_fasta file
val gene_tree : query -> nw file
val gene_tree : query -> newick file
val dn_tree : query -> text file
......
......@@ -19,7 +19,7 @@ module type S = sig
val amino_acid_alignment : query -> aminoacid_fasta file
val gene_tree : query -> nw file
val gene_tree : query -> newick file
val dn_tree : query -> text file
......
......@@ -20,11 +20,6 @@ class type phylip = object
method format : [`phylip]
end
class type nw = object
inherit text
method format : [`nw]
end
class type diffsel_tree = object
inherit text
method format : [`diffsel_tree]
......
......@@ -36,5 +36,5 @@ let phyml ~model ~tree phy : [`phyml] directory =
]
]
let phyml_tree ~model ~tree phy : nw file =
let phyml_tree ~model ~tree phy : newick file =
Workflow.select (phyml ~model ~tree phy) ["tree.phy_phyml_tree.txt"]
......@@ -43,8 +43,8 @@ type dn_ds_tsv = {
}
type reinfered_trees = {
reinfered_tree_nt : nw file ;
reinfered_tree_aa : nw file ;
reinfered_tree_nt : newick file ;
reinfered_tree_aa : newick file ;
input_tree : nhx file ;
tree_prefix : string ;
model_prefix : string ;
......
......@@ -32,5 +32,5 @@ val raxmlng_fna :
?model : string ->
fna: nucleotide_fasta file ->
unit ->
nw file
newick file
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