Commit dbaefa57 authored by Philippe Veber's avatar Philippe Veber
Browse files

README: updated install instructions

parent 08ce4d86
......@@ -30,25 +30,28 @@ sh <(curl -sL https://raw.githubusercontent.com/ocaml/opam/master/shell/install.
* post install step
```
opam init
opam init --compiler=4.07.1
eval "$(opam config env)"
opam switch create 4.07.1
```
## install dependencies
```
eval `opam config env`
opam pin add owl https://github.com/pveber/owl.git#fix-multinomial
opam pin add biocaml --dev-repo
opam pin add bistro --dev-repo
opam pin add pipes https://github.com/pveber/pipes.git
opam pin add gzt https://github.com/pveber/gzt.git
opam pin add phylogenetics https://github.com/biocaml/phylogenetics.git
opam pin add convdet https://gitlab.in2p3.fr/pveber/convdet.git
opam install ppx_csv_conv ocamlify
opam pin add -y owl-base https://github.com/pveber/owl.git#fix-multinomial
opam pin add -y owl https://github.com/pveber/owl.git#fix-multinomial
opam pin add -y biocaml --dev-repo
opam pin add -y bistro --dev-repo
opam pin add -y pipes https://github.com/pveber/pipes.git
opam pin add -y gzt https://github.com/pveber/gzt.git
opam pin add -y phylogenetics https://github.com/biocaml/phylogenetics.git
opam pin add -y convdet https://gitlab.in2p3.fr/pveber/convdet.git
opam install -y ppx_csv_conv ocamlify
```
Some of these steps may fail because of missing packages (Blas,
gsl). `opam` will give hints in that case. After following them, just
execute the same command line.
## install the pipeline and check if it works
```
......
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