Commit e15a8d04 authored by Philippe Veber's avatar Philippe Veber
Browse files

fix call to recall precision curve script

parent 8d0501ba
......@@ -2,7 +2,7 @@ FROM r-base
MAINTAINER Carine Rey carine.rey@ens-lyon.org
RUN echo 'install.packages(c("optparse", "ggplot2", "reshape2", "cowplot", "coda"), repos="https://mirror.ibcp.fr/pub/CRAN/", dependencies=TRUE)' > /tmp/packages.R \
RUN echo 'install.packages(c("PRROC","optparse", "ggplot2", "reshape2", "cowplot", "coda"), repos="https://mirror.ibcp.fr/pub/CRAN/", dependencies=TRUE)' > /tmp/packages.R \
&& Rscript /tmp/packages.R
RUN apt-get update && \
......
......@@ -177,7 +177,7 @@ let plot_convergent_sites ?(plot_all_sites = true) ~alignment ~detection_results
let recall_precision_curve table =
Workflow.shell ~descr:"recall_precision_curve" [
cmd "Rscript" [
cmd "Rscript" ~img:Env.env_r [
file_dump (string Scripts.recall_precision_curve) ;
dep table ;
dest ;
......
......@@ -62,7 +62,6 @@ main <- function(fn, dest) {
svg(dest)
print(plot_recall_precision)
dev.off()
saveRDS(list(dd, d), "/home/pveber/rien.rds")
}
main(args[1], args[2])
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