automatic upgrade to dune

app/dune

+(executable
+ (name reviewphiltrans_app)
+ (public_name reviewphiltrans)
+ (modules reviewphiltrans_app)
+ (libraries str reviewphiltrans))
+
+(executable
+ (name diffseldsparse_benchmark)
+ (public_name diffseldsparse_benchmark)
+ (modules diffseldsparse_benchmark)
+ (libraries reviewphiltrans)
+ (preprocess
+  (pps ppx_jane)))

app/jbuild

-(jbuild_version 1)
-
-(executable
- ((name reviewphiltrans_app)
-  (public_name reviewphiltrans)
-  (modules (reviewphiltrans_app))
-  (libraries (str reviewphiltrans))
-))
-
-(executable
- ((name diffseldsparse_benchmark)
-  (public_name diffseldsparse_benchmark)
-  (modules (diffseldsparse_benchmark))
-  (libraries (reviewphiltrans))
-  (preprocess (pps (ppx_jane)))
-))

dune-project

+(lang dune 1.0)
+(name reviewphiltrans)

lib/dune

+(library
+ (name reviewphiltrans)
+ (libraries biocaml.ez bistro.bioinfo bistro.utils convdet)
+ (preprocess
+  (pps ppx_jane ppx_csv_conv bistro.ppx)))
+
+(rule
+ (targets scripts.ml)
+ (action
+  (run bash ocamlify_scripts.sh))
+ (deps
+  (file ocamlify_scripts.sh)
+  (glob_files scripts/*)))

lib/jbuild

-(jbuild_version 1)
-
-(library
- ((name reviewphiltrans)
-  (libraries (biocaml.ez bistro.bioinfo bistro.utils convdet))
-  (preprocess (pps (ppx_jane ppx_csv_conv bistro.ppx)))
-))
-
-(rule
-  ((targets (scripts.ml))
-     (action (run bash ocamlify_scripts.sh))
-        (deps ((file ocamlify_scripts.sh)
-	          (glob_files scripts/*)))))