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VEBER Philippe
codepi
Commits
e960f289
Commit
e960f289
authored
Nov 07, 2020
by
Philippe Veber
Browse files
data/rubisco: syntax fixes
parent
4f6671ff
Changes
2
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data/rubisco/rubisco.nhx
data/rubisco/rubisco.nhx
+1
-1
data/rubisco/rubisco_species
data/rubisco/rubisco_species
+1
-1
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data/rubisco/rubisco.nhx
View file @
e960f289
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:0.00000102,Atriplex_aucherii:0.00208586);
((((Halimione_pedunculata:0.00864425,Halimione_verrucifera:0.00092984):0.00537145,(((((Axyris_prostrata:0.01534606,(Ceratocarpus_arenarius:0.02990907,Krascheninnikovia_ceratoides:0.01600814):0.01061137):0.01138461,((((Suckleya_suckleyana:0.02012189,(Cycloloma_atriplicifolium:0.00640215,(((Chenopodium_cristatum:0.00634437,Dysphania_glomulifera:0.00288888):0.00460287,Chenopodium_ambrosioides:0.00969603):0.00000102,Chenopodium_botrys:0.00526699):0.00107999):0.00625852):0.00776160,Teloxys_aristata:0.01280784):0.00226243,((((Hablitzia_tamnoides:0.01134794,(Aphanisma_blitoides:0.00619394,Patellifolia_patellaris:0.00764319):0.00433032):0.00373440,(Beta_vulgaris:0.00636735,Beta_nana:0.00208042):0.00762631):0.00483380,(((((Ptilotus_manglesii:0.01107055,(((Iresine_palmeri:0.00424920,((Gomphrena_elegans:0.00663687,(Pseudoplantago_friesii:0.00419924,Hebanthe_occidentalis:0.00000102):0.00949326):0.00646777,(((Guilleminea_densa:0.01097833,(Gomphrena_serrata:0.00106511,Gomphrena_haageana:0.00317777):0.00215240):0.00100613,Blutaparon_vermiculare:0.00106592):0.00746116,((Alternanthera_pungens:0.00211324,(Alternanthera_caracasana:0.00105849,Alternanthera_repens:0.00000102):0.00000102):0.01201192,Tidestromia_lanuginosa:0.02218561):0.00114104):0.00511913):0.00349103):0.00101479,Aerva_javanica:0.01510976):0.00000102,(Pupalia_lappacea:0.00526750,(((Sericostachys_scandens:0.00745715,(Achyranthes_aspera:0.00105486,Nototrichium_humile:0.00419384):0.00318201):0.00101179,Pandiaka_angustifolia:0.00633305):0.00000102,Calicorema_capitata:0.00209471):0.00000102):0.00209457):0.00062618):0.01733079,(((Chamissoa_altissima:0.02775692,((Amaranthus_greggii:0.00000102,Amaranthus_tricolor:0.00105299):0.00000102,(Amaranthus_blitum:0.00000102,Amaranthus_hypochondriacus:0.00643206):0.00318172):0.01451714):0.01188603,(Deeringia_amaranthoides:0.01401420,(Hermbstaedtia_glauca:0.01188740,(Celosia_trigyna:0.00334626,Celosia_argentea:0.00847134):0.01103714):0.00739590):0.00290398):0.01207656,(Charpentiera_ovata:0.00000102,Charpentiera_obovata:0.00209837):0.02101136):0.00404498):0.00873580,Bosea_yervamora:0.01246853):0.00123834,((Nitrophila_occidentalis:0.00423941,Hemichroa_diandra:0.00313045):0.00491046,Polycnemum_perenne:0.01602915):0.01564853):0.00340750,Oreobliton_thesioides:0.02566195):0.00231295):0.00112808,((((((Halocharis_hispida:0.00853137,(Salsola_vermiculata:0.01173181,(Salsola_implicata:0.00524366,((Salsola_orientalis:0.00000102,Salsola_dshungarica:0.00000102):0.00210063,Salsola_micranthera:0.00105274):0.00209641):0.00000102):0.00426190):0.00395543,((((Petrosimonia_glaucescens:0.00000102,Petrosimonia_squarrosa:0.00000102):0.00322210,Petrosimonia_nigdeensis:0.01301656):0.00193353,Petrosimonia_sibirica:0.00758872):0.00287087,(((Halimocnemis_villosa:0.00000102,Halimocnemis_karelinii:0.00000102):0.01067822,((Salsola_sukaczevii:0.00000102,(Salsola_ferganica:0.00000102,Salsola_heptapotamica:0.00000102):0.00000102):0.00000102,Climacoptera_lanata:0.00000102):0.00316698):0.00115767,(Salsola_affinis:0.00480242,Climacoptera_brachiata:0.00210931):0.00143556):0.00353572):0.00540349):0.00242058,(Nanophyton_erinaceum:0.01724365,(((((Kochia_americana:0.00536817,Bassia_diffusa:0.00421106):0.00431594,((Bassia_dasyphylla:0.00531623,(Maireana_brevifolia:0.00104529,(Sclerolaena_obliquicuspis:0.00315592,(Roycea_divaricata:0.00104718,Dissocarpus_paradoxus:0.00105135):0.00000102):0.00105266):0.00102656):0.00214954,((Kochia_densiflora:0.00848085,(Chenoleoides_tomentosa:0.00313108,(Bassia_prostrata:0.01079383,Panderia_pilosa:0.00868129):0.00199012):0.00000102):0.00634913,(Bassia_sedoides:0.00519018,Camphorosma_monspeliaca:0.01051475):0.00478526):0.00325729):0.00095378):0.01175947,((Sympegma_regelii:0.00955615,Halothamnus_bottae:0.00439455):0.00217134,((((((Salsola_rosacea:0.00167187,Noaea_mucronata:0.00464541):0.00215133,Ofaiston_monandrum:0.01030439):0.00355407,Rhaphidophyton_regelii:0.00208826):0.00000102,Salsola_arbusculiformis:0.00000102):0.00000102,Salsola_laricifolia:0.00209005):0.00104353,(((Anabasis_brevifolia:0.00000102,Anabasis_truncata:0.00314889):0.00104267,(Anabasis_eriopoda:0.00104311,(Anabasis_aphylla:0.00210649,(Anabasis_salsa:0.00000102,Anabasis_elatior:0.00104471):0.00209836):0.00210361):0.00211717):0.00209977,(((Girgensohnia_oppositiflora:0.00635314,(Halogeton_glomeratus:0.00638604,(Haloxylon_ammodendron:0.00000102,Haloxylon_persicum:0.00000102):0.00421249):0.00105843):0.00000102,((Haloxylon_tamariscifolium:0.00209455,(Horaninovia_ulicina:0.01192778,Halogeton_arachnoideus:0.00426781):0.00206553):0.00000102,Iljinia_regelii:0.00000102):0.00000102):0.00105483,Salsola_foliosa:0.00634975):0.00209463):0.00000102):0.00506880):0.00115837):0.00324816,(Salsola_arbuscula:0.00211160,(Salsola_kali:0.00104118,((Salsola_chinghaiensis:0.00104318,(Salsola_zaidamica:0.00104394,((Salsola_komarovii:0.00000102,Salsola_ruthenica:0.00000102):0.00000102,Salsola_collina:0.00000102):0.00000102):0.00000102):0.00104205,(Salsola_praecox:0.00000102,(Salsola_pellucida:0.00000102,Salsola_paulsenii:0.00000102):0.00000102):0.00000102):0.00000102):0.00207039):0.00528234):0.00105494,Salsola_genistoides:0.00314018):0.00104526):0.00000102):0.01140271,((((((Arthrocnemum_macrostachyum:0.00208856,(Sarcocornia_utahensis:0.00430842,Salicornia_europaea:0.01084361):0.00208472):0.00214026,((Tecticornia_disarticulata:0.00213150,Sclerostegia_moniliformis:0.00212837):0.00426304,(Tecticornia_australasica:0.00105460,((Salicornia_dolichostachya:0.01671719,Halosarcia_indica:0.00632785):0.00650166,Pachycornia_triandra:0.00319160):0.00000102):0.00000102):0.00107232):0.00217706,((Halostachys_belangeriana:0.00142728,Halopeplis_amplexicaulis:0.00498422):0.00319933,(Kalidium_cuspidatum:0.00536000,(Kalidium_caspicum:0.00424783,Kalidium_foliatum:0.00000102):0.00000102):0.00285700):0.00467946):0.00134451,Allenrolfea_occidentalis:0.00724180):0.00692387,Bienertia_cycloptera:0.01313946):0.00702054,((Suaeda_maritima:0.00490738,Suaeda_crassifolia:0.00388120):0.01891477,((Suaeda_physophora:0.00588870,Suaeda_microphylla:0.00486985):0.00972204,Suaeda_altissima:0.01306847):0.00725815):0.00443597):0.00709752):0.01330392,(Agriophyllum_squarrosum:0.01187852,(Corispermum_filifolium:0.00957955,Anthochlamys_multinervis:0.00119607):0.00642820):0.00603656):0.00283291,Acroglochin_chenopodioides:0.01944356):0.00152637):0.00377071):0.00227794,(((Monolepis_nuttalliana:0.00314556,Spinacia_oleracea:0.02411154):0.01335566,Chenopodium_foliosum:0.00648643):0.00205671,Chenopodium_bonushenricus:0.00310884):0.00219374):0.00092256):0.00745230,Chenopodium_coronopus:0.00690985):0.00615396,(Microgynoecium_tibeticum:0.01320943,((((Chenopodium_acuminatum:0.00209272,((Chenopodium_album:0.00000102,Chenopodium_murale:0.00104331):0.00314773,Chenopodium_sanctaeclarae:0.00423868):0.00000102):0.00000102,Chenopodium_frutescens:0.00000102):0.00000102,Micromonolepis_pusilla:0.00526085):0.00099815,((Einadia_nutans:0.00104063,Rhagodia_drummondi:0.00000102):0.00208881,(Chenopodium_desertorum:0.00104282,Chenopodium_auricomum:0.00104393):0.00000102):0.00321817):0.01116813):0.00067388):0.00433628,(Manochlamys_albicans:0.00519597,Archiatriplex_nanpinensis:0.00861502):0.00212072):0.00206883):0.00649188,(((((Atriplex_parryi:0.00104219,((Atriplex_phyllostegia:0.00104244,Atriplex_serenana:0.00000102):0.00000102,Atriplex_powellii:0.00104263):0.00209024):0.00000102,((Atriplex_lampa:0.00209727,Atriplex_undulata:0.00104916):0.00103801,Atriplex_lentiformis:0.00104296):0.00000102):0.00000102,(((Atriplex_spongiosa:0.00104854,Atriplex_rosea:0.00313774):0.00000102,Atriplex_centralasiatica:0.00419604):0.00105750,Atriplex_glauca:0.00419623):0.00209055):0.00104288,Atriplex_coriacea:0.00419172):0.00104689,(Atriplex_halimus:0.00208849,Cremnophyton_lanfrancoi:0.00000102):0.00000102):0.00000102):0.00104026,(Atriplex_australasica:0.00000102,Atriplex_patula:0.00000102):0.00000102,Atriplex_aucherii:0.00208586);
data/rubisco/rubisco_species
View file @
e960f289
Achyranthes_aspera C3
Acroglochin_chenopodioides
C3
Acroglochin_chenopodioides
C3
Aerva_javanica C4
Agriophyllum_squarrosum C3
Allenrolfea_occidentalis C3
...
...
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