update msd e value (only 0.05)

lib/msd.ml

@@ -7,8 +7,8 @@ open File_formats
 let env = docker_image ~account:"carinerey" ~name:"msd" ~tag:"08082018" ()
 
 let msd ~e ~(faa:aminoacid_fasta workflow) ~(tree_sc:_ workflow) : [`msd] directory workflow =
-  let map_table = tmp // "map.tsv" in
-  let tree_nw = tmp // "tree.nw" in
+  let map_table = dest // "map.tsv" in
+  let tree_nw = dest // "tree.nw" in
   let out = dest // "out.tsv" in
   workflow ~descr:"convergence_detection.run_msd" [
     mkdir_p dest;
@@ -23,7 +23,7 @@ let msd ~e ~(faa:aminoacid_fasta workflow) ~(tree_sc:_ workflow) : [`msd] direct
       opt "-t" int 1;
       opt "-o"  ident out ;
       opt "-e" float e ;
-      dep tree_sc;
+      ident tree_nw;
       ident map_table;
       dep faa;
     ];

lib/pipeline.ml

@@ -259,7 +259,7 @@ let derive_from_dataset ~dataset ~preview ~fast_mode=
       `Topological_LG;
       `Multinomial;
       `Pcoc;
-    ] @ List.map [0.05;1.] (fun x -> `Msd x)) ;
+    ] @ List.map [0.05] (fun x -> `Msd x)) ;
     if preview then
       []
     else