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VEBER Philippe
codepi
Commits
f6007d2f
Commit
f6007d2f
authored
Aug 15, 2018
by
Carine Rey
Browse files
update msd e value (only 0.05)
parent
8be76084
Changes
2
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2 changed files
with
4 additions
and
4 deletions
+4
-4
lib/msd.ml
lib/msd.ml
+3
-3
lib/pipeline.ml
lib/pipeline.ml
+1
-1
No files found.
lib/msd.ml
View file @
f6007d2f
...
...
@@ -7,8 +7,8 @@ open File_formats
let
env
=
docker_image
~
account
:
"carinerey"
~
name
:
"msd"
~
tag
:
"08082018"
()
let
msd
~
e
~
(
faa
:
aminoacid_fasta
workflow
)
~
(
tree_sc
:_
workflow
)
:
[
`msd
]
directory
workflow
=
let
map_table
=
tmp
//
"map.tsv"
in
let
tree_nw
=
tmp
//
"tree.nw"
in
let
map_table
=
dest
//
"map.tsv"
in
let
tree_nw
=
dest
//
"tree.nw"
in
let
out
=
dest
//
"out.tsv"
in
workflow
~
descr
:
"convergence_detection.run_msd"
[
mkdir_p
dest
;
...
...
@@ -23,7 +23,7 @@ let msd ~e ~(faa:aminoacid_fasta workflow) ~(tree_sc:_ workflow) : [`msd] direct
opt
"-t"
int
1
;
opt
"-o"
ident
out
;
opt
"-e"
float
e
;
de
p
tree_
sc
;
i
de
nt
tree_
nw
;
ident
map_table
;
dep
faa
;
];
...
...
lib/pipeline.ml
View file @
f6007d2f
...
...
@@ -259,7 +259,7 @@ let derive_from_dataset ~dataset ~preview ~fast_mode=
`Topological_LG
;
`Multinomial
;
`Pcoc
;
]
@
List
.
map
[
0
.
05
;
1
.
]
(
fun
x
->
`Msd
x
))
;
]
@
List
.
map
[
0
.
05
]
(
fun
x
->
`Msd
x
))
;
if
preview
then
[]
else
...
...
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