Commit f6007d2f authored by Carine Rey's avatar Carine Rey
Browse files

update msd e value (only 0.05)

parent 8be76084
......@@ -7,8 +7,8 @@ open File_formats
let env = docker_image ~account:"carinerey" ~name:"msd" ~tag:"08082018" ()
let msd ~e ~(faa:aminoacid_fasta workflow) ~(tree_sc:_ workflow) : [`msd] directory workflow =
let map_table = tmp // "map.tsv" in
let tree_nw = tmp // "tree.nw" in
let map_table = dest // "map.tsv" in
let tree_nw = dest // "tree.nw" in
let out = dest // "out.tsv" in
workflow ~descr:"convergence_detection.run_msd" [
mkdir_p dest;
......@@ -23,7 +23,7 @@ let msd ~e ~(faa:aminoacid_fasta workflow) ~(tree_sc:_ workflow) : [`msd] direct
opt "-t" int 1;
opt "-o" ident out ;
opt "-e" float e ;
dep tree_sc;
ident tree_nw;
ident map_table;
dep faa;
];
......
......@@ -259,7 +259,7 @@ let derive_from_dataset ~dataset ~preview ~fast_mode=
`Topological_LG;
`Multinomial;
`Pcoc;
] @ List.map [0.05;1.] (fun x -> `Msd x)) ;
] @ List.map [0.05] (fun x -> `Msd x)) ;
if preview then
[]
else
......
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