Commits · 2a8d34e1c5037591a45ecc8388dd3714aab32a2a · VEBER Philippe / codepi

25 Jul, 2018 8 commits
- add type profile + split profile_fn in 3 classes at the beginning of the pipeline · 2a8d34e1
  Carine Rey authored Jul 25, 2018
  
  2a8d34e1
- add matplotlib and docopt in python docker · 525b1d4f
  Carine Rey authored Jul 25, 2018
  
  525b1d4f
- generate_pairs now outputs separate files for distance classes (separation... · 0067c5c2
  LANORE Vincent authored Jul 25, 2018
```
generate_pairs now outputs separate files for distance classes (separation into classes is very simple so far :/)
```
  0067c5c2
- Added Jensen-Shannon divergence and distance + added progress bar · 2ec82128
  LANORE Vincent authored Jul 25, 2018
  
  2ec82128
- generate_pairs now outputs a tsv of profile pairs + distance · b255b6ba
  LANORE Vincent authored Jul 25, 2018
  
  b255b6ba
- More work towards generate_pairs. Now able to pick profiles and compute... · 4f6531ee
  LANORE Vincent authored Jul 25, 2018
```
More work towards generate_pairs. Now able to pick profiles and compute euclidian distance between them.
```
  4f6531ee
- Changed 263 profiles from ssv to tsv · f4d28bc5
  LANORE Vincent authored Jul 25, 2018
  
  f4d28bc5
- Started working on generate_pairs.py script to generate sorted profile pairs. · 3e25eb7a
  LANORE Vincent authored Jul 25, 2018
  
  3e25eb7a
24 Jul, 2018 2 commits
- keep running infos · 172cee79
  Carine Rey authored Jul 24, 2018
  
  172cee79
- autoincremente the number of diffsel iterations · 3d7a93df
  Carine Rey authored Jul 24, 2018
  
  3d7a93df
23 Jul, 2018 7 commits
- fixed scripts/plot_sens_spe_all_trees · 6435d849
  Philippe Veber authored Jul 23, 2018
  
  6435d849
- add msd_meth (not working well yet due to output msd format but compile) · 8f3a909f
  Carine Rey authored Jul 23, 2018
  
  8f3a909f
- Corrections to msd files and makefile so it compiles. Msd dockerfile now works. · 6ae4542d
  LANORE Vincent authored Jul 23, 2018
  
  6ae4542d
- Updated diffsel docker + improved Dockerfile so it doesn't cache git clone +... · b43d2d28
  LANORE Vincent authored Jul 23, 2018
```
Updated diffsel docker + improved Dockerfile so it doesn't cache git clone + changed image name in pipeline.
```
  b43d2d28
- update r_basics docker version (add pandoc) · 8a17aa45
  Carine Rey authored Jul 23, 2018
  
  8a17aa45
- add final convergence checking of diffsel · f10560c8
  Carine Rey authored Jul 23, 2018
  
  f10560c8
- try to compile msd (not working) · 9696a2ad
  Carine Rey authored Jul 23, 2018
  
  9696a2ad
20 Jul, 2018 13 commits
- typoq · ca7b4eaa
  Carine Rey authored Jul 20, 2018
  
  ca7b4eaa
- add an option to run test hyp · 0e8ab97f
  Carine Rey authored Jul 20, 2018
  
  0e8ab97f
- get more info from simus · 10badf91
  Carine Rey authored Jul 20, 2018
  
  10badf91
- add 2 hypothesis based on different Ne, H0_BigNeInSmallNe and H0_SmallNeInBigNe · e51ad99e
  Carine Rey authored Jul 20, 2018
  
  e51ad99e
- Removed command.py that was not supposed to be there · 0c1575dd
  LANORE Vincent authored Jul 20, 2018
  
  0c1575dd
- Removed hypotheses for this weekend's run · 5aebfca7
  LANORE Vincent authored Jul 20, 2018
  
  5aebfca7
- forgotten script · 73471609
  Carine Rey authored Jul 20, 2018
  
  73471609
- Actually added new trees + restored old ones · 7d889316
  LANORE Vincent authored Jul 20, 2018
  
  7d889316
- Corrected trees so hey are in their own folder and all have Transition tags · dafe6095
  LANORE Vincent authored Jul 20, 2018
  
  dafe6095
- update for namming convention · 2aef8d8c
  Carine Rey authored Jul 20, 2018
  
  2aef8d8c
- add final sens spe plot · 50a9e4b5
  Carine Rey authored Jul 20, 2018
  
  50a9e4b5
- Changed trees for analyses over the weekend. · c7f806b1
  LANORE Vincent authored Jul 20, 2018
  
  c7f806b1
- fix some typos · 0bab399e
  Carine Rey authored Jul 20, 2018
  
  0bab399e
19 Jul, 2018 10 commits
- calculate and plot an auto threshold per detection methode for each input tree · 725d12e7
  Carine Rey authored Jul 19, 2018
  
  725d12e7
- update · 2b59323d
  Carine Rey authored Jul 19, 2018
  
  2b59323d
- typo · 6e84db50
  Carine Rey authored Jul 19, 2018
  
  6e84db50
- Updated makefile with Carine's suggestions · 2e60dfa3
  LANORE Vincent authored Jul 19, 2018
  
  2e60dfa3
- Update makefile for analysis · 8249be36
  LANORE Vincent authored Jul 19, 2018
  
  8249be36
- update Ne analyses · 5d9273ff
  Carine Rey authored Jul 19, 2018
  
  5d9273ff
- add H0_NeVerySmall hyp · 02cfe919
  Carine Rey authored Jul 19, 2018
  
  02cfe919
- update post analyses · 57e06a9a
  Carine Rey authored Jul 19, 2018
  
  57e06a9a
- update bbpsuite docker version (update bpp-phyl) · a4fc5571
  Carine Rey authored Jul 19, 2018
  
  a4fc5571
- Forceful removal of diffsel_bis · e233b013
  LANORE Vincent authored Jul 19, 2018
  
  e233b013