Commits · 2fc375b62042565ed0878fd640bb727c426e934f · VEBER Philippe / codepi

03 Sep, 2018 1 commit
- time_logger: resume on failure operational · 2fc375b6
  Philippe Veber authored Sep 03, 2018
  
  2fc375b6
31 Aug, 2018 14 commits
- Updated tdg09 docker with fixed tdg09 · 9443ef17
  LANORE Vincent authored Aug 31, 2018
  
  9443ef17
- Merge branch 'master' into get_fixed_seeds · 9e81940a
  LANORE Vincent authored Aug 31, 2018
  
  9e81940a
- end add dataset with indels · 0972a129
  Carine Rey authored Aug 31, 2018
  
  0972a129
- add exe · df593f00
  Carine Rey authored Aug 31, 2018
  
  df593f00
- Changed seed calculation to use proper hash functions. · 7a6deec3
  LANORE Vincent authored Aug 31, 2018
  
  7a6deec3
- add a new couple with indels · 2bcb3e92
  Carine Rey authored Aug 31, 2018
  
  2bcb3e92
- update totake into account indels · aed9c6ab
  Carine Rey authored Aug 31, 2018
  
  aed9c6ab
- update pcoc version (take into account indels) · 6fab92e8
  Carine Rey authored Aug 31, 2018
  
  6fab92e8
- elapsed_time file now contains the date so as not to be overwritten on re-running the pipeline. · aa74e39b
  LANORE Vincent authored Aug 31, 2018
  
  aa74e39b
- add in the repo the figure for the paper · c8363867
  Carine Rey authored Aug 31, 2018
  
  c8363867
- add msd in the plot_per_hyp · 9c41e5c0
  Carine Rey authored Aug 31, 2018
  
  9c41e5c0
- Updated msd version (sources + dockerfile + docker version in pipeline). · dc3ac956
  LANORE Vincent authored Aug 31, 2018
  
  dc3ac956
- Added init of caml random seed so the seed is indeed random when not providing one. · e516218a
  LANORE Vincent authored Aug 31, 2018
  
  e516218a
- fix errors if external usage · e67ee873
  Carine Rey authored Aug 31, 2018
  
  e67ee873
27 Aug, 2018 4 commits
- create a fixed seed by dataset · 705914d1
  Carine Rey authored Aug 27, 2018
  
  705914d1
- fix repetititve building of a same workflow (don't work with random seed) · 110b7fe9
  Carine Rey authored Aug 27, 2018
  
  110b7fe9
- add seed ids in the log (debug) · 6bce0845
  Carine Rey authored Aug 27, 2018
  
  6bce0845
- add a descr to prepare (to know which input trees are unrooted) · 0717a7ff
  Carine Rey authored Aug 27, 2018
  
  0717a7ff
26 Aug, 2018 2 commits
- root besnard2009 (real_data) · 7bbcea03
  Carine Rey authored Aug 26, 2018
  
  7bbcea03
- root C4AmaranthaceaePolyroot · ab829191
  Carine Rey authored Aug 26, 2018
  
  ab829191
24 Aug, 2018 4 commits
- bppsuite: fixed random seed usage · 1a98f301
  Philippe Veber authored Aug 24, 2018
  
  1a98f301
- started adding seed control · aa74ed23
  Philippe Veber authored Aug 24, 2018
  
  aa74ed23
- check if input tree is rooted · d93a3737
  Carine Rey authored Aug 24, 2018
  
  d93a3737
- root cyp_coding tree · c92ad5ce
  Carine Rey authored Aug 24, 2018
  
  c92ad5ce
23 Aug, 2018 2 commits
- add plot B'' = delta FP between NeC var · 2f69d022
  Carine Rey authored Aug 23, 2018
  
  2f69d022
- Updated diffsel docker to "dirty fix" version :) · a062c9ca
  LANORE Vincent authored Aug 13, 2018
  
  a062c9ca
20 Aug, 2018 2 commits
- removed API calls from Service · bc34bfc2
  Philippe Veber authored Aug 20, 2018
  
  bc34bfc2
- bppsuite: fixed warnings · e98068ed
  Philippe Veber authored Aug 20, 2018
  
  e98068ed
16 Aug, 2018 1 commit
- rm absent meths to get plot A' · 7ac83d9d
  Carine Rey authored Aug 16, 2018
  
  7ac83d9d
15 Aug, 2018 2 commits
- update msd e value (only 0.05) · f6007d2f
  Carine Rey authored Aug 15, 2018
  
  f6007d2f
- update makefile · 8be76084
  Carine Rey authored Aug 15, 2018
  
  8be76084
13 Aug, 2018 6 commits
- fix error with tdg09 · 6c8a35ba
  Carine Rey authored Aug 13, 2018
  
  6c8a35ba
- update tree · 50501d57
  Carine Rey authored Aug 13, 2018
  
  50501d57
- replace (native) NA site by negative site in tdg09 · 09168632
  Carine Rey authored Aug 13, 2018
  
  09168632
- rm warning · 8e3ed83b
  Carine Rey authored Aug 13, 2018
  
  8e3ed83b
- add an argument (e) to Msd · f23e90fe
  Carine Rey authored Aug 13, 2018
  
  f23e90fe
- msd: added several values for e parameter · c82b037a
  Philippe Veber authored Aug 13, 2018
  
  c82b037a
10 Aug, 2018 2 commits
- update 4 the big analyses of the we · 4d6ddab5
  Carine Rey authored Aug 10, 2018
  
  4d6ddab5
- new plots · e320d098
  Carine Rey authored Aug 10, 2018
  
  e320d098