Commits · 39680754912705484f2ae56ad932aac540c417e5 · VEBER Philippe / codepi

14 Sep, 2018 9 commits
- prep dn ds diversity analyses · 39680754
  Carine Rey authored Sep 14, 2018
  
  39680754
- Added two more trees (orthomam with different conditions). · 399325fe
  LANORE Vincent authored Sep 14, 2018
  
  399325fe
- Added ratio output to inferred tree script · 38246e33
  LANORE Vincent authored Sep 13, 2018
  
  38246e33
- improve plot · 0e9c7c3b
  Carine Rey authored Sep 14, 2018
  
  0e9c7c3b
- fix error reprodcucibility · 592fee23
  Carine Rey authored Sep 14, 2018
  
  592fee23
- rm plot to save stockage · c84d0c5f
  Carine Rey authored Sep 14, 2018
  
  c84d0c5f
- improve plot · 4a30f0cc
  Carine Rey authored Sep 14, 2018
  
  4a30f0cc
- fix typo · d10933f3
  Carine Rey authored Sep 14, 2018
  
  d10933f3
- add testnh · f3cf278e
  Carine Rey authored Sep 14, 2018
  
  f3cf278e
13 Sep, 2018 3 commits
- fix typo · 962ce952
  Carine Rey authored Sep 13, 2018
  
  962ce952
- Added script to compute inferred tree lengths from ali+tree · 2f05ec1c
  LANORE Vincent authored Sep 13, 2018
  
  2f05ec1c
- update bppphyl version · 22cc0113
  Carine Rey authored Sep 13, 2018
  
  22cc0113
12 Sep, 2018 25 commits
- Did some cleaning in the trees. Removed all duplicates except rescaled +... · cba3af5b
  LANORE Vincent authored Sep 12, 2018
```
Did some cleaning in the trees. Removed all duplicates except rescaled + removed all bl_X trees except rescaled
```
  cba3af5b
- Added the script that was used to make the distance/score stacked bar plots. · 2b93d1dd
  LANORE Vincent authored Sep 12, 2018
  
  2b93d1dd
- Removed unused variables warnings :) · 6ff457e1
  LANORE Vincent authored Sep 12, 2018
  
  6ff457e1
- add sum_bl · 1f0be708
  Carine Rey authored Sep 12, 2018
  
  1f0be708
- update the C4AmaranthaceaePolyroot tree · 289b9991
  Carine Rey authored Sep 11, 2018
  
  289b9991
- fix seed of test_val · 85a79617
  Carine Rey authored Sep 11, 2018
  
  85a79617
- fix error if preview mode · 7bf2cdd2
  Carine Rey authored Sep 11, 2018
  
  7bf2cdd2
- fix error if preview · 5fdb758a
  Carine Rey authored Sep 11, 2018
  
  5fdb758a
- Added rescaled tree for new experiments. · c35dafd6
  LANORE Vincent authored Sep 11, 2018
  
  c35dafd6
- try calculate auc · 74c0c4e7
  Carine Rey authored Sep 10, 2018
  
  74c0c4e7
- rm pair distance filter · 5269c2bc
  Carine Rey authored Sep 07, 2018
  
  5269c2bc
- add auc in output but still some pbs with identical · 5ad9e327
  Carine Rey authored Sep 07, 2018
  
  5ad9e327
- clean up in hyp · f0a5fa14
  Carine Rey authored Sep 07, 2018
  
  f0a5fa14
- add new hypo (work still in progress) · 12dab7be
  Carine Rey authored Sep 07, 2018
  
  12dab7be
- add new hypo (work in progress) · e6e7603b
  Carine Rey authored Sep 07, 2018
  
  e6e7603b
- new plots · 40dbc4db
  Carine Rey authored Sep 07, 2018
  
  40dbc4db
- Revert "try NeG5_NeC_2.5 et NeG2.5_NeC5" · 377f7f64
  Carine Rey authored Sep 07, 2018
```
This reverts commit ed2857b1.
```
  377f7f64
- try NeG5_NeC_2.5 et NeG2.5_NeC5 · 956fe71d
  Carine Rey authored Sep 07, 2018
  
  956fe71d
- fix typo · df0facf1
  Carine Rey authored Sep 06, 2018
  
  df0facf1
- add plot Eucl D · b265a412
  Carine Rey authored Sep 06, 2018
  
  b265a412
- rm t · 49043724
  Carine Rey authored Sep 06, 2018
  
  49043724
- add Min in profile.ml + use Unif_3 by default · 8964bf65
  Carine Rey authored Sep 06, 2018
  
  8964bf65
- add NeG1_NeC_5 NeG5_NeC_1 · 49d9223a
  Carine Rey authored Sep 06, 2018
  
  49d9223a
- update tdg09 FDR -> LRT + plot · d5954698
  Carine Rey authored Sep 06, 2018
  
  d5954698
- add plot dist · b0512326
  Carine Rey authored Sep 05, 2018
  
  b0512326
11 Sep, 2018 1 commit
- Added a Cyp tree rescaled to have the same number of aa substititions in simulated vs real data. · 081cea32
  boussau authored Sep 11, 2018
  
  081cea32
05 Sep, 2018 2 commits
- alistats mode: computation of mean number of residues per column · 4c569e33
  Philippe Veber authored Sep 05, 2018
  
  4c569e33
- functions on alignments · 6bc754e8
  Philippe Veber authored Sep 05, 2018
  
  6bc754e8