Commits · 452d2794a401622285f21b76f5d0584173911421 · VEBER Philippe / codepi

11 Jul, 2018 8 commits
- add new trees · 452d2794
  Carine Rey authored Jul 11, 2018
  
  452d2794
- add HaPC · 155bd5df
  Carine Rey authored Jul 11, 2018
  
  155bd5df
- Merge branch 'real_input_data' · e599f322
  Carine Rey authored Jul 11, 2018
  
  e599f322
- add real data analyse · a2a02222
  Carine Rey authored Jul 11, 2018
  
  a2a02222
- fix errors comming from real data (indels) · 7ee9fe7d
  Carine Rey authored Jul 11, 2018
  
  7ee9fe7d
- add real_data in the detection pipeline · 672218d3
  Carine Rey authored Jul 11, 2018
  
  672218d3
- add real data · 45aea615
  Carine Rey authored Jul 11, 2018
  
  45aea615
- Corrected bug (hanging popen if stdout is too big) in try_again · f8512d1e
  LANORE Vincent authored Jul 11, 2018
  
  f8512d1e
10 Jul, 2018 16 commits
- Changed number of sites for make analyses to 50 · c47d0740
  LANORE Vincent authored Jul 10, 2018
  
  c47d0740
- Modified analysis for diffsel · f8aa1c1a
  LANORE Vincent authored Jul 10, 2018
  
  f8aa1c1a
- fix python2 compatibility error · e67f59cb
  Carine Rey authored Jul 10, 2018
  
  e67f59cb
- Updated try_again (debug on stderr + only last stdout is displayed + exponential timeout) · d4c3c6e9
  LANORE Vincent authored Jul 10, 2018
  
  d4c3c6e9
- update tdg09 docker version · 6ab3f384
  Carine Rey authored Jul 10, 2018
  
  6ab3f384
- add a timeout at Tdg09 · e1837425
  Carine Rey authored Jul 10, 2018
  
  e1837425
- Fixed timeout being unused · fa2f9b7f
  LANORE Vincent authored Jul 10, 2018
  
  fa2f9b7f
- add PC and OC in the final plot · 1947c69d
  Carine Rey authored Jul 10, 2018
  
  1947c69d
- Added "try again" script · 8497cf04
  LANORE Vincent authored Jul 10, 2018
  
  8497cf04
- refactoring · cd2dd003
  Carine Rey authored Jul 10, 2018
  
  cd2dd003
- fix error: bad input tree in the outdir (but broken link) · fd5ff577
  Carine Rey authored Jul 03, 2018
  
  fd5ff577
- add H0+Ha · 99b996a3
  Carine Rey authored Jul 10, 2018
  
  99b996a3
- Fix of the fix · 875124f2
  LANORE Vincent authored Jul 10, 2018
  
  875124f2
- Fixed typo in new analyze script · 28ccc6f6
  LANORE Vincent authored Jul 10, 2018
  
  28ccc6f6
- add different Ne values + some refactoring) · a5a8fee7
  Carine Rey authored Jul 10, 2018
  
  a5a8fee7
- Updated diffsel analysis script to take results close to 0 into account. · a2a5d6e0
  LANORE Vincent authored Jul 10, 2018
  
  a2a5d6e0
09 Jul, 2018 5 commits
- fix error if only 1 aa in the contengency table · 101d8fed
  Carine Rey authored Jul 09, 2018
  
  101d8fed
- add HxNe hypothesis (working but Ne parameter to be fixed) · 653893fc
  Carine Rey authored Jul 09, 2018
  
  653893fc
- Last fix is now optimized for clarity · f065a29f
  LANORE Vincent authored Jul 09, 2018
  
  f065a29f
- Corrected nb_cols bug for profiles · acc0e489
  LANORE Vincent authored Jul 09, 2018
  
  acc0e489
- Modified diffsel analyze script inputs · f3b6864b
  LANORE Vincent authored Jun 28, 2018
  
  f3b6864b
05 Jul, 2018 11 commits
- add an embryonic README · 2d468e4a
  Carine Rey authored Jul 05, 2018
  
  2d468e4a
- use better aa profiles · 072697df
  Carine Rey authored Jul 05, 2018
  
  072697df
- use better aa profiles · 6970e047
  Carine Rey authored Jul 05, 2018
  
  6970e047
- update tdg09 indicator · ddbc8651
  Carine Rey authored Jul 05, 2018
  
  ddbc8651
- fix index error · a6e57745
  Carine Rey authored Jul 05, 2018
  
  a6e57745
- use phylip-relaxed format · 34f4f4a1
  Carine Rey authored Jul 05, 2018
  
  34f4f4a1
- finish topological parser · 9954c982
  Carine Rey authored Jul 05, 2018
  
  9954c982
- sort methodes · c232051c
  Carine Rey authored Jul 05, 2018
  
  c232051c
- run 2 different diffsel runs · 5da79870
  Carine Rey authored Jul 05, 2018
  
  5da79870
- use Dn in OneChange · a41e262c
  Carine Rey authored Jul 05, 2018
  
  a41e262c
- typo · 1da76a4b
  Carine Rey authored Jul 05, 2018
  
  1da76a4b