Commits · 6b3eecf2749107f324e0868089d2bfee6dc11f4e · VEBER Philippe / codepi

21 Nov, 2020 1 commit

tk/Multinomial_test: added a degree of freedom correction heuristic for lrt · 6b3eecf2

Philippe Veber authored Nov 20, 2020

it is based on the assumption of Wilks theorem that the maximum
likelihood estimate shouldn't lie at the border of the parameter
space.

6b3eecf2

20 Nov, 2020 2 commits
- dune-project: add Louis to author list · bc7ef385
  Philippe Veber authored Nov 20, 2020
  
  bc7ef385
- update wrt bistro · 69e06469
  Philippe Veber authored Nov 20, 2020
  
  69e06469
19 Nov, 2020 5 commits
- renamed tk/Multinomial into Multinomial_test · 47ecba26
  Philippe Veber authored Nov 19, 2020
  
  47ecba26
- included multinomial test from phylogenetics_convergence · 8f0cb4f6
  Philippe Veber authored Nov 19, 2020
  
  8f0cb4f6
- multinomial: refactoring · f9f89f6e
  Philippe Veber authored Nov 19, 2020
  
  f9f89f6e
- new tk/Multinomial module · eb3f23a1
  Philippe Veber authored Nov 19, 2020
  
  eb3f23a1
- update wrt phylogenetics · 5ea7464a
  Philippe Veber authored Nov 19, 2020
  
  5ea7464a
17 Nov, 2020 19 commits
- Merge branch 'simulation-dataset-refactoring' · 1ece636f
  Philippe Veber authored Nov 17, 2020
  
  1ece636f
- Multinomial: fixed labels of CPT file · 5eba3f41
  Philippe Veber authored Nov 17, 2020
  
  5eba3f41
- removed buggy version of multinomial · e594f2a8
  Philippe Veber authored Nov 17, 2020
  
  e594f2a8
- tk/Cpt: fixed bug · 27217276
  Philippe Veber authored Nov 17, 2020
  
  27217276
- Simulation_pipeline.Mutsel: separate benchmark of its rds output · 8d3102fe
  Philippe Veber authored Nov 17, 2020
  
  8d3102fe
- Simulation_pipeline.Mutsel.benchmark: use all columns in cpt files · 54d6b1a3
  Philippe Veber authored Nov 17, 2020
  
  54d6b1a3
- tk: new Cpt module · ce9c40f6
  Philippe Veber authored Nov 17, 2020
  
  ce9c40f6
- tk/Dataframe: added columns · 9dcc49a4
  Philippe Veber authored Nov 17, 2020
  
  9dcc49a4
- More precise type for detection method outputs · 8e7685ab
  Philippe Veber authored Nov 17, 2020
  
  8e7685ab
- File_formats: fixed phylip format · 8210cff4
  Philippe Veber authored Nov 17, 2020
  
  8210cff4
- File_formats: removed redundant nw · d4a259a7
  Philippe Veber authored Nov 17, 2020
  
  d4a259a7
- removed app/diffseldsparse_benchmark · ba9835df
  Philippe Veber authored Nov 17, 2020
  
  ba9835df
- renamed Simulation_dataset into Simulation_pipeline · e4fd8e26
  Philippe Veber authored Nov 17, 2020
  
  e4fd8e26
- Simulation_dataset: separate in-house simulation and bppseqgen's · bbdd8e37
  Philippe Veber authored Nov 17, 2020
  
  bbdd8e37
- Detection_pipeline: include ops from query · 265897c0
  Philippe Veber authored Nov 17, 2020
  
  265897c0
- File_format: nhx special case of newick · 93b3460e
  Philippe Veber authored Nov 17, 2020
  
  93b3460e
- Simulation_dataset: new signature · 1a09d0ef
  Philippe Veber authored Nov 17, 2020
  
  1a09d0ef
- Simulation_dataset: renaming · a2508335
  Philippe Veber authored Nov 17, 2020
  
  a2508335
- moved lib/toolbox to lib/tk · b295e9ff
  Philippe Veber authored Nov 17, 2020
  
  b295e9ff
11 Nov, 2020 6 commits
- Simulation_dataset.benchmark_stats: fixed bug · 9a03de8b
  Philippe Veber authored Nov 11, 2020
  
  9a03de8b
- tk/Convergence_tree: added test · 94013a1b
  Philippe Veber authored Nov 11, 2020
  
  94013a1b
- generate R-readable summary out of benchmark · 74b927db
  Philippe Veber authored Nov 11, 2020
  
  74b927db
- update .ocamlinit · 4434509f
  Philippe Veber authored Nov 11, 2020
  
  4434509f
- evaluation by average precision · d4686c3b
  Philippe Veber authored Nov 11, 2020
  
  d4686c3b
- implemented precision recall curve and auc calculations · 12b017f6
  Philippe Veber authored Nov 11, 2020
  
  12b017f6
09 Nov, 2020 5 commits
- update wrt biotk · 281111f8
  Philippe Veber authored Nov 09, 2020
  
  281111f8
- lmm benchmark · 2079ac34
  Philippe Veber authored Nov 09, 2020
  
  2079ac34
- RP curve: allow to choose column in result file · eb0e6316
  Philippe Veber authored Nov 09, 2020
  
  eb0e6316
- refactored simulation to use tk · 702df100
  Philippe Veber authored Nov 09, 2020
  
  702df100
- tk: new simulator module · 194e8dde
  Philippe Veber authored Nov 09, 2020
  
  194e8dde
08 Nov, 2020 2 commits
- scripts: don't check if tree is rooted when not necessary · c356bed6
  Philippe Veber authored Nov 08, 2020
  
  c356bed6
- data/rubisco: fixed fasta character encoding · a0c6b95c
  Philippe Veber authored Nov 08, 2020
  
  a0c6b95c