Commits · 8b3cd971433c9c26c7338e2bd6d4be8e3c8c7310 · VEBER Philippe / codepi

25 Jun, 2018 7 commits
- add a parsing step after diffsel · 8b3cd971
  Carine Rey authored Jun 25, 2018
  
  8b3cd971
- fix encoding bug · 003d828f
  Carine Rey authored Jun 25, 2018
  
  003d828f
- rm bistro incompatible behavior · 8ca6796c
  Carine Rey authored Jun 25, 2018
  
  8ca6796c
- try to use local python package · b1ac3c14
  Carine Rey authored Jun 25, 2018
  
  b1ac3c14
- add pandas and docopt · 0f25e8c7
  Carine Rey authored Jun 25, 2018
  
  0f25e8c7
- Updated gitignore · f97541b2
  LANORE Vincent authored Jun 25, 2018
  
  f97541b2
- Added missing dependency for the diffsel analysis script · 37076d45
  LANORE Vincent authored Jun 25, 2018
  
  37076d45
22 Jun, 2018 9 commits
- Added temporary script to analyze diffsel trace (it takes the maximum aa... · ca0eedbf
  LANORE Vincent authored Jun 22, 2018
```
Added temporary script to analyze diffsel trace (it takes the maximum aa probability for each site).
```
  ca0eedbf
- add some TODOs · 566892d0
  Carine Rey authored Jun 22, 2018
  
  566892d0
- add temporaly catfasta2phyml in bppsuite docker · 3889e9ef
  Carine Rey authored Jun 22, 2018
  
  3889e9ef
- add bppseqgen multi profiles · c1ba7517
  Carine Rey authored Jun 22, 2018
  
  c1ba7517
- add a new tree · 8dd45285
  Carine Rey authored Jun 22, 2018
  
  8dd45285
- add profile freqs · a9fa799a
  Carine Rey authored Jun 22, 2018
  
  a9fa799a
- refactoring · 3040a425
  Carine Rey authored Jun 22, 2018
  
  3040a425
- update · dce707d1
  Carine Rey authored Jun 22, 2018
  
  dce707d1
- add empirical aa freqencies in simulations · 961383a1
  Carine Rey authored Jun 22, 2018
  
  961383a1
21 Jun, 2018 2 commits
- rm ENTRYPOINT · 2d3aa01b
  Carine Rey authored Jun 21, 2018
  
  2d3aa01b
- add pcoc/pcoc_gamma/diffsel · b8717f8a
  Carine Rey authored Jun 21, 2018
  
  b8717f8a
20 Jun, 2018 3 commits
- refactoring · d316236f
  Carine Rey authored Jun 20, 2018
  
  d316236f
- little refactoring + add loggers · ebc348d9
  Carine Rey authored Jun 20, 2018
  
  ebc348d9
- add clean and clean_test · fa05d13f
  Carine Rey authored Jun 20, 2018
  
  fa05d13f
19 Jun, 2018 6 commits
- récupération des noeuds de chaque modèle pour bppseqgen · 30a50eba
  Philippe Veber authored Jun 19, 2018
  
  30a50eba
- refactoring on convergence_hypothesis · 25fa66f4
  Philippe Veber authored Jun 19, 2018
  
  25fa66f4
- refactoring: don't repeat select paths · 25efcb37
  Philippe Veber authored Jun 19, 2018
  
  25efcb37
- refactoring · c33c07df
  Philippe Veber authored Jun 19, 2018
  
  c33c07df
- compilation of external scripts · 631e6a6a
  Philippe Veber authored Jun 19, 2018
  
  631e6a6a
- define 2 different models · d1a36d18
  Carine Rey authored Jun 19, 2018
  
  d1a36d18
18 Jun, 2018 13 commits
- start pipeline with several models (very beginning) · fcc90e34
  Carine Rey authored Jun 18, 2018
  
  fcc90e34
- fix error · 3e20c213
  Carine Rey authored Jun 18, 2018
  
  3e20c213
- add ete3 Dockerfile · 64b6d302
  Carine Rey authored Jun 18, 2018
  
  64b6d302
- update example · e8f3e234
  Carine Rey authored Jun 18, 2018
  
  e8f3e234
- ignore example output · 5005d999
  Carine Rey authored Jun 18, 2018
  
  5005d999
- refactor output directory as "datasets" · 656b6af8
  Carine Rey authored Jun 18, 2018
  
  656b6af8
- typing · 8b707edb
  Carine Rey authored Jun 18, 2018
  
  8b707edb
- add a new workflow: fna2faa · 927ad8f5
  Carine Rey authored Jun 18, 2018
  
  927ad8f5
- add new types (aminoacid_fasta; parsed_input_tree; raw_dataset; ready_dataset) · c0acc5c5
  Carine Rey authored Jun 18, 2018
  
  c0acc5c5
- add a new workflow to parse input trees · 5b401815
  Carine Rey authored Jun 18, 2018
  
  5b401815
- add bppseqgen type · fbf4e99b
  Carine Rey authored Jun 18, 2018
  
  fbf4e99b
- set bppsuite docker tag · 2ec817f8
  Carine Rey authored Jun 18, 2018
  
  2ec817f8
- update example · 62b15402
  Carine Rey authored Jun 18, 2018
  
  62b15402